PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I01092.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YC
Protein Properties Length: 375aa    MW: 40301.1 Da    PI: 11.248
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I01092.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC28.33.8e-09260349899
           NF-YC   8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                     +q  +a+d+   ++P+ar++++++a++   + s ea  l+ ka e+f+ +++  ++ +a + +++++   +++  v + + f+fl d vp+ 
  Pahal.I01092.2 260 DQKATAADMGSCSFPMARVRQLMRAEDATIRASNEAVFLINKASEFFLGKFAEDAYRNALKDRKKSIIYDNLS--VCSQKGFKFLSDFVPQR 349
                     56778899999************************************************99999999888875..66777899*****9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.92E-12257347IPR009072Histone-fold
PfamPF008081.3E-10272333IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.1E-15273348IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MAGKKTTPVK PAPPSTQRNG SATPSSKGRP KQASGEASAA SAKARSAPKP RKITKEKLAA  60
AKRKRDKPEP QEGGKRKKQQ ASGDVATPAK KRKKGDRPES KPQKEPKPAK KKQQPGKPEK  120
PATPGKRHQS SGKQEKATTP SKKQPSSGKP EKAATPVKKQ QSPGKPEKPV TPAKKQQSTG  180
KAEKPAPTPK KQQQSPGKAR KSAAPATTPT KKKQAKSEKP TPTKRKRGDD EPQNEARSPK  240
RASADGDAPA STPVKKKRKD QKATAADMGS CSFPMARVRQ LMRAEDATIR ASNEAVFLIN  300
KASEFFLGKF AEDAYRNALK DRKKSIIYDN LSVCSQKGFK FLSDFVPQRV TAEDALKTTA  360
GNKSQADARL LVLC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18894AKKRKKG
28993KKRKK
3210226KKKQAKSEKPTPTKRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792625.10.0muscle M-line assembly protein unc-89-like isoform X1
TrEMBLA0A2S3IG390.0A0A2S3IG39_9POAL; Uncharacterized protein
STRINGPavir.Ib04487.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.16e-21nuclear factor Y, subunit C10