PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I01426.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 190aa    MW: 20321.8 Da    PI: 5.6988
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I01426.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260115.63.1e-36191191101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk +rr+C++dCvlapyfpa++p+++a+v+++FGasnv ++l++lp +er +a+++++ eA+ r++dPvyG++g++ +lq +++ ++ ela
  Pahal.I01426.1  19 RCAACKNQRRRCSQDCVLAPYFPASDPQRYACVQRVFGASNVARMLQNLPIHERGKAADTMAVEAHRRVEDPVYGCAGIVGRLQGEIRAAQCELA 113
                     6********************************************************************************************** PP

          DUF260  96 llkeel 101
                     ++++++
  Pahal.I01426.1 114 RTQAQI 119
                     *99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.66918119IPR004883Lateral organ boundaries, LOB
PfamPF031959.2E-3619116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MSTSSSTEAA AAASPGIRRC AACKNQRRRC SQDCVLAPYF PASDPQRYAC VQRVFGASNV  60
ARMLQNLPIH ERGKAADTMA VEAHRRVEDP VYGCAGIVGR LQGEIRAAQC ELARTQAQIA  120
VHAAAAARAR PAVDAAQLNA PAQAALPQQQ QEQCDALAMQ QDPFQGLDAL LVDDYRVDVN  180
LVDDEMNTD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-31101141113LOB family transfactor Ramosa2.1
5ly0_B9e-31101141113LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796458.11e-134LOB domain-containing protein 24-like
SwissprotP594673e-40LBD23_ARATH; LOB domain-containing protein 23
SwissprotP594683e-40LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A2S3IHC21e-132A0A2S3IHC2_9POAL; Uncharacterized protein
STRINGPavir.J05299.1.p5e-91(Panicum virgatum)
STRINGPavir.J09684.1.p2e-91(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52823562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.11e-36LBD family protein