PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I01545.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 340aa    MW: 37688.4 Da    PI: 6.7426
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I01545.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.92e-092562912055
                     HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     +k +yps++e+  LA+ +gL+++q+ +WF N+R ++
  Pahal.I01545.1 256 YKWPYPSETEKLALAETTGLDQKQINNWFINQRKRH 291
                     4679*****************************885 PP
2ELK439.6e-15211232122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKhqLlrKY+gyLg+L+qEFs
  Pahal.I01545.1 211 ELKHQLLRKYGGYLGGLRQEFS 232
                     9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.7E-2178122IPR005540KNOX1
PfamPF037907.8E-2280120IPR005540KNOX1
SMARTSM012566.6E-28130181IPR005541KNOX2
PfamPF037911.2E-23135180IPR005541KNOX2
PROSITE profilePS5121311.575211231IPR005539ELK domain
SMARTSM011884.2E-8211232IPR005539ELK domain
PfamPF037893.6E-11211232IPR005539ELK domain
PROSITE profilePS5007112.989231294IPR001356Homeobox domain
SuperFamilySSF466891.54E-19232304IPR009057Homeodomain-like
SMARTSM003898.4E-12233298IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.1E-27236297IPR009057Homeodomain-like
CDDcd000863.01E-12243294No hitNo description
PfamPF059202.0E-16251290IPR008422Homeobox KN domain
PROSITE patternPS000270269292IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDSFKDLGGG GSSASKASFL QLPLPASSSA QGFPSPDGHH HSSRLPLQQL LADPSGAQRN  60
HQMDGAVVQR EISPVDAEII KAKIMSHPQY SALVAAYLDC QKVGAPPDVS DRLSAMAAKL  120
DAQPGPSRRR REPARADPEL DQFMEAYCNM LVKYQEELAR PIQEAAEFFK SMERQLDSIT  180
DSNYCEGAGS SEDDQDGSCP EEIDPFAEDK ELKHQLLRKY GGYLGGLRQE FSKRKKKGKL  240
PKEARQKLLH WWELHYKWPY PSETEKLALA ETTGLDQKQI NNWFINQRKR HWKPTSEDMP  300
FAMMEAAGGF HAPQGAAAAL YVASRTPFMA DGGMHRLGS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10488233}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00671PBMTransfer from GRMZM2G135447Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9663730.0EU966373.1 Zea mays clone 293957 homeobox protein rough sheath 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795146.10.0homeobox protein knotted-1-like 12 isoform X3
SwissprotQ10ED21e-116KNOS8_ORYSJ; Homeobox protein knotted-1-like 8
TrEMBLA0A2S3IIB40.0A0A2S3IIB4_9POAL; Uncharacterized protein
STRINGPavir.Ia00428.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.13e-83KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]