PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I01545.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 334aa    MW: 36976.7 Da    PI: 7.1192
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I01545.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.92e-092502852055
                     HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     +k +yps++e+  LA+ +gL+++q+ +WF N+R ++
  Pahal.I01545.3 250 YKWPYPSETEKLALAETTGLDQKQINNWFINQRKRH 285
                     4679*****************************885 PP
2ELK439.3e-15205226122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKhqLlrKY+gyLg+L+qEFs
  Pahal.I01545.3 205 ELKHQLLRKYGGYLGGLRQEFS 226
                     9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.7E-2178122IPR005540KNOX1
PfamPF037907.6E-2280120IPR005540KNOX1
SMARTSM012562.7E-29130181IPR005541KNOX2
PfamPF037911.2E-23135180IPR005541KNOX2
SMARTSM011884.2E-8205226IPR005539ELK domain
PfamPF037893.5E-11205226IPR005539ELK domain
PROSITE profilePS5121311.575205225IPR005539ELK domain
PROSITE profilePS5007112.989225288IPR001356Homeobox domain
SuperFamilySSF466891.5E-19226298IPR009057Homeodomain-like
SMARTSM003898.4E-12227292IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.0E-27230291IPR009057Homeodomain-like
CDDcd000863.28E-12237288No hitNo description
PfamPF059202.0E-16245284IPR008422Homeobox KN domain
PROSITE patternPS000270263286IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDSFKDLGGG GSSASKASFL QLPLPASSSA QGFPSPDGHH HSSRLPLQQL LADPSGAQRN  60
HQMDGAVVQR EISPVDAEII KAKIMSHPQY SALVAAYLDC QKVGAPPDVS DRLSAMAAKL  120
DAQPGPSRRR REPARADPEL DQFMEAYCNM LVKYQEELAR PIQEAAEFFK SMERQLDSIT  180
GAGSSEDDQD GSCPEEIDPF AEDKELKHQL LRKYGGYLGG LRQEFSKRKK KGKLPKEARQ  240
KLLHWWELHY KWPYPSETEK LALAETTGLD QKQINNWFIN QRKRHWKPTS EDMPFAMMEA  300
AGGFHAPQGA AAALYVASRT PFMADGGMHR LGS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00671PBMTransfer from GRMZM2G135447Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795147.10.0homeobox protein knotted-1-like 12 isoform X4
SwissprotO650341e-115KNOSC_ORYSI; Homeobox protein knotted-1-like 12
SwissprotO804161e-115KNOSC_ORYSJ; Homeobox protein knotted-1-like 12
TrEMBLA0A2S3IIB40.0A0A2S3IIB4_9POAL; Uncharacterized protein
STRINGPavir.Ia00428.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-82KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y, et al.
    Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
    EMBO J., 1999. 18(4): p. 992-1002
    [PMID:10022841]
  2. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  3. Nagasaki H,Sakamoto T,Sato Y,Matsuoka M
    Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
    Plant Cell, 2001. 13(9): p. 2085-98
    [PMID:11549765]
  4. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  5. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  6. Yin H, et al.
    SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
    Planta, 2013. 237(1): p. 15-27
    [PMID:22956125]