PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I01591.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 382aa MW: 38847.9 Da PI: 7.8926

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I01591.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.7	4.6e-32	113	166	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Pahal.I01591.1 113 PRMRWTTALHARFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 166 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.4E-29	109	167	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.14E-16	111	167	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-23	113	166	IPR006447	Myb domain, plants
Pfam	PF00249	5.9E-8	114	165	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MLQRNLPNLS LRISPPASSS AAASDAPALA KPPSPEPSTA SYADEGSGEV GFFANPSPGA 60 EPPGLSLGLG TPAHGGNAAG RRGHLEPQGC AFKRAATRAS LPAGGSKRRS RAPRMRWTTA 120 LHARFVHAVE LLGGHERATP KSVLELMNVK DLTLAHVKSH LQMYRTVKST DRSLHIATGE 180 ALPLQRTATG MEAAAAAGGG GGGGAAAAGC GVVVIPVVPA ACDDMVGICS SPSAGSAPPA 240 AATTSAAHFL CAPPATAPLA AAPSPPPPIP PRTDHAAGVL QKGVAIVDSA QRCQRHNFSP 300 PLLQHDTQAA QEEANHHLAM GLHASAEAVA TKCSSPGSSS SPSFASVELL ADDMYAPSLE 360 ISLGRQDWRM EPPEELSLKY L*

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MLQRNLPNLS LRISPPASSS AAASDAPALA KPPSPEPSTA SYADEGSGEV GFFANPSPGA  60
EPPGLSLGLG TPAHGGNAAG RRGHLEPQGC AFKRAATRAS LPAGGSKRRS RAPRMRWTTA  120
LHARFVHAVE LLGGHERATP KSVLELMNVK DLTLAHVKSH LQMYRTVKST DRSLHIATGE  180
ALPLQRTATG MEAAAAAGGG GGGGAAAAGC GVVVIPVVPA ACDDMVGICS SPSAGSAPPA  240
AATTSAAHFL CAPPATAPLA AAPSPPPPIP PRTDHAAGVL QKGVAIVDSA QRCQRHNFSP  300
PLLQHDTQAA QEEANHHLAM GLHASAEAVA TKCSSPGSSS SPSFASVELL ADDMYAPSLE  360
ISLGRQDWRM EPPEELSLKY L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-16	114	168	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-16	114	168	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-16	114	168	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-16	114	168	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT065124	1e-111	BT065124.1 Zea mays full-length cDNA clone ZM_BFb0205B22 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796878.1	0.0	probable transcription factor GLK2
TrEMBL	A0A2S3IHT9	0.0	A0A2S3IHT9_9POAL; Uncharacterized protein
STRING	Pavir.Ia00330.1.p	1e-173	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6554	37	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.2	2e-36	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pahal.I01591.1