PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I01643.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 817aa    MW: 88782.4 Da    PI: 6.1191
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I01643.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.31.8e-29590646259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK+ k++e prsYY+Ct  gCpvkk vers  d+ ++eitY+g+Hnh+
  Pahal.I01643.1 590 KDGYSWRKYGQKQLKDAESPRSYYKCTRDGCPVKKVVERSF-DGFITEITYKGRHNHP 646
                     8****************************************.***************8 PP
2WRKY102.32.8e-32717775159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg++ prsYY+Ct  +C+v+k++er+++dp++v +tY+g+Hnh+
  Pahal.I01643.1 717 LDDGYRWRKYGQKVVKGNPRPRSYYKCTADNCNVRKQIERASTDPRCVLTTYTGRHNHD 775
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF508141.62E-2062157IPR011038Calycin-like
Gene3DG3DSA:2.40.128.207.9E-3267242IPR012674Calycin
PfamPF122046.2E-1770395IPR022017Domain of unknown function DUF3598
SuperFamilySSF508141.62E-20184241IPR011038Calycin-like
SuperFamilySSF508144.51E-28261400IPR011038Calycin-like
Gene3DG3DSA:2.40.128.203.7E-41261401IPR012674Calycin
PROSITE profilePS5081123.169584648IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-26586648IPR003657WRKY domain
SuperFamilySSF1182901.57E-23588648IPR003657WRKY domain
SMARTSM007744.9E-32589647IPR003657WRKY domain
PfamPF031067.4E-23590646IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.9E-33702777IPR003657WRKY domain
SuperFamilySSF1182901.26E-27710777IPR003657WRKY domain
PROSITE profilePS5081135.439712777IPR003657WRKY domain
SMARTSM007741.5E-35717776IPR003657WRKY domain
PfamPF031068.5E-24718775IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    Send to blast
MAEALVGLRF AAPAFPQPQR HRCACLLPAA RFAPFWRGRL HTARAAVAGP PEVDEDEAMS  60
IDNLHRFFDL NMGKWDGSFY QFDVHGRVLQ GISTRLSVST YGEDNLISLL QSLYIKQASS  120
AISIVDEDDS EPEWVEYKIK ETNMFTVDKY QQIGFFPEEK AFALRYQTAG MLETVLRVGV  180
LGEDDTGEES PKNLKIPSRK PSIVCENCLY SLEGNGRVRA FHIMDPKGVL DTLLVFHERQ  240
GSAVPQPLIR SPVGTENASR DRINALLGRW EGHSVTKRSG VYGATLAEAD TAVVLKMDGN  300
GQLIQDTLST KIGTGTTTTV NWTGSANNNL LQFDGGYEIT LLPGGMYMGY PSDISKSVAK  360
LDSFHLEFCW MESPEKRQRL VRTYDSAGLA VSSTYFLETK VAAMDDRRGR GDAMRQRPFA  420
PAAQGQERVF DGGGGGPAFG GDFDQGSSLM ALLGAGGVSS SQPPLPSWGV EEVTAAPAIN  480
LVPQSFAMVS YAPPAPSYQQ PTSFGQSPPG GRMDPYPPYL HADPPPQWPP PRSTAAAASS  540
FPPQNFTVLL PRYDQDMQQL RASALFGVGS SQPHGLPLPP PAAAIEQPAK DGYSWRKYGQ  600
KQLKDAESPR SYYKCTRDGC PVKKVVERSF DGFITEITYK GRHNHPRPQE RGHAGGGNEA  660
LAAAEDMDGP SDDDDDDALH EDDVDGAPGM GAGGEAGQRV VKKPKIIIQT PSEVDLLDDG  720
YRWRKYGQKV VKGNPRPRSY YKCTADNCNV RKQIERASTD PRCVLTTYTG RHNHDPPGRG  780
NEAAAAACSA GQPTPPAGGS GAFQQTGGAR ELKEER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yvf_A1e-1535640115357BFA1
5yvf_B1e-1535640115357BFA1
5yvf_C1e-1535640115357BFA1
5yvf_D1e-1535640115357BFA1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9618220.0EU961822.1 Zea mays clone 238426 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690074.10.0PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC102720317
TrEMBLK4A5N40.0K4A5N4_SETIT; Uncharacterized protein
STRINGSi034188m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28753236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.23e-52WRKY DNA-binding protein 26