PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I01674.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 303aa    MW: 31206.3 Da    PI: 5.0698
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I01674.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.8e-1788137255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Pahal.I01674.1  88 TFRGVRMRV-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 137
                     59****999.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-3188146IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2088146IPR016177DNA-binding domain
PROSITE profilePS5103222.81388145IPR001471AP2/ERF domain
SMARTSM003806.7E-3788151IPR001471AP2/ERF domain
PRINTSPR003677.8E-1089100IPR001471AP2/ERF domain
PfamPF008472.0E-1189137IPR001471AP2/ERF domain
CDDcd000183.57E-2989147No hitNo description
PRINTSPR003677.8E-10111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEADAIHGPT TSSSSDGDSG AGSCVINGAQ ELPSTNGRQH KHVKRKRATS PPAAPGGRRA  60
PEAAVDEEGS GGGAGRRKRG SAGTRHPTFR GVRMRVWGKW VSEIREPRKK SRIWLGTFPT  120
AEMAARAHDV AALAIKGRAA HLNFPHLAHE LPRPASTAPA DIQAAAAMAA AAADVEQCVS  180
SHADETSSSS AASSEKVATA AKAAAAAITA DVEQCESSPA AETSSSSAAS SVEAAAGHTE  240
ENVLFDLPDL LLDLSDGLWS PIWAAAPAAA EEYDGDSLHE PLLWADDDDQ CWMDAAAPVQ  300
PD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1882146873Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812680.10.0ethylene-responsive transcription factor ERF038-like
TrEMBLA0A2S3GS090.0A0A2S3GS09_9POAL; Uncharacterized protein
STRINGPavir.Aa00832.1.p1e-127(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.15e-39ERF family protein