PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I01675.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 260aa    MW: 27025.1 Da    PI: 4.7441
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I01675.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-1875123355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr +  +g+Wv+eIr+p++   + r++lg+f+t+e+Aa+a++ a+++++g
  Pahal.I01675.1  75 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFDTPEMAARAHDVAALAIKG 123
                     9****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-1373123IPR001471AP2/ERF domain
PROSITE profilePS5103223.22274131IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2174131IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-3274132IPR001471AP2/ERF domain
SMARTSM003801.7E-3774137IPR001471AP2/ERF domain
CDDcd000186.77E-3175132No hitNo description
PRINTSPR003671.3E-107586IPR001471AP2/ERF domain
PRINTSPR003671.3E-1097113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MSLLETASRA RCSSVMEEER ALSPVSDAST TCSSSGGGSG PGSPAASLAS LDDSGAASAA  60
SSRKRPRREL KHPAYRGVRM RAWGKWVSEI REPRKKSRIW LGTFDTPEMA ARAHDVAALA  120
IKGRAAHLNF PEMSHELPRA ASAAPEDVRA AAALAAAMES VAPAAPSDSS HGGAAGSDED  180
EEPAASASPV HDAGNAGGEE KAAPSIEHPV QADGLVLDLA LLDLPDVLLE FGFELALPPT  240
STPCCYDLSW DEPLLLWEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-18721311272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9701801e-133EU970180.1 Zea mays clone 341615 dehydration-responsive element-binding protein 1B mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792130.10.0ethylene-responsive transcription factor ERF043-like
TrEMBLA0A2S3GS720.0A0A2S3GS72_9POAL; Uncharacterized protein
STRINGGRMZM2G041839_P011e-114(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16750.18e-37ERF family protein