PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I01677.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 234aa    MW: 24391.8 Da    PI: 4.8161
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I01677.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.7e-1855104255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Pahal.I01677.1  55 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 104
                     69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.1E-3255113IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-2155113IPR016177DNA-binding domain
SMARTSM003808.0E-3755118IPR001471AP2/ERF domain
PROSITE profilePS5103222.95855112IPR001471AP2/ERF domain
PfamPF008473.1E-1255104IPR001471AP2/ERF domain
CDDcd000187.30E-3156114No hitNo description
PRINTSPR003671.4E-105667IPR001471AP2/ERF domain
PRINTSPR003671.4E-107894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MAMEDSSSCS EPTTSSSAEA PASPSATTAC SSSDSSSSPG KGTKRRRSKD GHHPTYRGVR  60
MRAWGKWVSE IREPRKKSRI WLGTFATAEM AARAHDVAAL AIKGRAAHLN FPELAGELPR  120
PATAAPKDVQ AAAALAAAAN FPAPGANADG AGRADPDDDG PDASASPPQP QETDGNPDDA  180
LFDLPDLLFD LGRHGPSSCQ LSCAASWDDD VCFPGAGASF RLEEPPPLLW DYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-17531121272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282621e-137KJ728262.1 Zea mays clone pUT6539 AP2-EREBP transcription factor (EREB176) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827814.11e-167ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ71e-51ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A2S3GRS81e-165A0A2S3GRS8_9POAL; Uncharacterized protein
STRINGPavir.Aa00834.1.p8e-95(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.13e-40ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]