PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I01795.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 403aa    MW: 42906.9 Da    PI: 10.533
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I01795.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.9e-31337395259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  Pahal.I01795.1 337 ADEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGDHNHN 395
                     69*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105338.5E-17290334IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.807.1E-34324396IPR003657WRKY domain
PROSITE profilePS5081129.757331397IPR003657WRKY domain
SuperFamilySSF1182909.02E-27334395IPR003657WRKY domain
SMARTSM007742.5E-38336396IPR003657WRKY domain
PfamPF031069.0E-27338394IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MEGMEEANRA AVESCHRVLT LLSNPHGQLV PNKDLVAATG EAVTKFGSVT AKLSNSNGNG  60
LQGHARVRKI KKPLAIFDSN LFLESSAVAT TAAAATAAKA PSASPITGLQ LFPRYHQMEG  120
SSSKDPVRIP TQFPKRLLLE NLAAGLEGPP SQAPPVHMVQ PVSVAPPAGT PTPALPAAHL  180
HFIQQQHSYQ RFQLMQQMKI QSEMMKRSNL GDQGGSLSGG GGGGSGVGAK GVNLKFDSSN  240
CTASSSRSFL SSLSMEGSLA SLDVSRANRP FQLVSGSQTS STPELGLVQR RRCTGKEDGS  300
GRCATGSRCH CSKKRKLRIR RSIKVPAISN KVADIPADEF SWRKYGQKPI KGSPHPRGYY  360
KCSSVRGCPA RKHVERCVDD PSMLIVTYEG DHNHNRVVAQ PA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-203343951272WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9406800.0AY940680.1 Zea mays WRKY1 mRNA, complete cds.
GenBankBT0839930.0BT083993.1 Zea mays full-length cDNA clone ZM_BFb0063A21 mRNA, complete cds.
GenBankEU9561730.0EU956173.1 Zea mays clone 1558475 WRKY transcription factor 21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796671.10.0protein WRKY1
SwissprotQ32SG40.0WRKY1_MAIZE; Protein WRKY1
TrEMBLA0A2S3IIA70.0A0A2S3IIA7_9POAL; Uncharacterized protein
STRINGPavir.Ia00625.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102503242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.14e-51WRKY DNA-binding protein 21