PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I01870.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 753aa    MW: 78555 Da    PI: 6.9021
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I01870.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.7e-095525891954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Pahal.I01870.1 552 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 589
                     564459******************************88 PP
2BELL120.48.2e-39413483272
            BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     r e+q+kkakL+s+l+eVd+rY++y++q+q+v++ F+ v+g g+a+pYt+lA+ka+SrhFrcLkdaia+q+
  Pahal.I01870.1 413 RFEHQRKKAKLISMLDEVDRRYNHYCDQMQMVVNFFDSVMGFGAATPYTALAQKAMSRHFRCLKDAIASQL 483
                     779******************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.8E-70335481IPR006563POX domain
PfamPF075263.8E-53340480IPR006563POX domain
PROSITE profilePS5007112.6530593IPR001356Homeobox domain
SMARTSM003891.6E-9533597IPR001356Homeobox domain
CDDcd000864.25E-13533594No hitNo description
SuperFamilySSF466892.57E-17535600IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-28536599IPR009057Homeodomain-like
PfamPF059203.8E-18550589IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
MGIAAPPSQP GQTTTYVSQP TKSSAAISGR PATASSMSHS QGFHQGSSGV FGYSSDGFDR  60
PDSSQDHPQQ HVAQQSRRDK LRVQGFDPAA AAGHGLLPID GDEHAEPGAM YEHAAAAAGA  120
SNMLSEMFNF PAPPSGPSAT ELLASQMNAN YRFGLRQGPG GVGGLSGDGG WFGAGAAGRA  180
GLVLGGANMG SLGETSSPKQ QGSMAGLATD PAAAMQLFLM NPQQSRSSPT SPQPSDVQQH  240
HEAFQAFGGA AAPFGGGGGA GGVVEGQGLS LSLSPSLQQL EMAKQAEELR VRDGVLYFNR  300
QQQGPSVQQQ QQLPMALHGQ VGALGQQLHV GYGPAGVAGV LRNSKYTRAA QELLEEFCSV  360
GRGQIKGGAR SGRGASASNP SAGKGGGGAS SSGAAQSPSS ASKEPPQLSP ADRFEHQRKK  420
AKLISMLDEV DRRYNHYCDQ MQMVVNFFDS VMGFGAATPY TALAQKAMSR HFRCLKDAIA  480
SQLRHTCELL GEKDAGTSSG LTKGETPRLR AIDQSLRQQR AFHHMGMMEQ EAWRPQRGLP  540
ERSVNILRSW LFEHFLHPYP SDADKHLLAR QTGLSRNQVS NWFINARVRL WKPMIEEMYQ  600
QECRELEGSS AGGGGPESGN DPSGADDTHS PTTTGAVAVQ QLSQQQQQQH GTAAPGMMPH  660
KPDPGAAGPS AADAAFVGID PVELLGGDAH VGGGADDLYG RFEPGVRMRY GPGATGAAAG  720
DVSLTLGLQH AGAGNAGPDG TDRFSLRDYS GC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-17539596158Homeobox protein Meis1
4xrs_B2e-17539596158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9575010.0EU957501.1 Zea mays clone 1595427 homeodomain protein JUBEL1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797615.10.0BEL1-like homeodomain protein 4 isoform X2
RefseqXP_025797616.10.0BEL1-like homeodomain protein 4 isoform X2
SwissprotQ94KL51e-139BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBLA0A2S3IIH00.0A0A2S3IIH0_9POAL; Uncharacterized protein
STRINGMLOC_58467.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44332945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.31e-131BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]