PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I01892.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRF

Protein Properties

Length: 497aa MW: 53257.8 Da PI: 7.5416

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I01892.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	75.1	7.3e-24	118	161	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Pahal.I01892.2 118 LEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 161 69***************************************986 PP
2	QLQ	58.4	2.2e-20	50	86	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKyLaan P+P+ Ll++i++ Pahal.I01892.2 50 GPFTPSQWIELEHQALIYKYLAANSPIPHSLLVPIRR 86 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.6E-11	50	86	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.1E-14	51	85	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.914	51	86	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.65	117	161	IPR014977	WRC domain
Pfam	PF08879	4.0E-20	119	160	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009624	Biological Process	response to nematode
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0061062	Biological Process	regulation of nematode larval development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MKQYMFLAVP CWLSLLCCSS LTLPACFLPA GLSSVSLSSS MQGAMARVRG PFTPSQWIEL 60 EHQALIYKYL AANSPIPHSL LVPIRRSIAS SPYPPSYFGT STLGWGSFQL GYSGNADLEP 120 GRCRRTDGKK WRCSRDAVAD QKYCERHMNR GRHRSRKHVE GQPGHAAKAM SAAVAAAAAT 180 QPTALAASGA GATAAGLTVS QHQQPVKSYA AGATDPCSLQ YNRELVNKQN ESDNMQDSDN 240 LSMLTSMSTR NPASLFPFSK QNNPFEVTSS RPEFGLVSSD SLMSSPHSSL ENVNLLSSQS 300 LNENQSSASL QHFVDWPRTP AQGGLSWADA EDMQAPRSQL SISAPMASSE LSSASTSPIH 360 EKLMLSPLKL SREYSPIGLS ITASRDEVSQ LEANWATMFR DSSMGGPLGE VLTKNGNAEA 420 KNCLSAPLNL LTDFWDSSPG MESSPVGVLQ KTTFGSVSSS TGSSPRMENH GAYDGISNLR 480 DDLGSIVVNH PSIRLL*

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MKQYMFLAVP CWLSLLCCSS LTLPACFLPA GLSSVSLSSS MQGAMARVRG PFTPSQWIEL  60
EHQALIYKYL AANSPIPHSL LVPIRRSIAS SPYPPSYFGT STLGWGSFQL GYSGNADLEP  120
GRCRRTDGKK WRCSRDAVAD QKYCERHMNR GRHRSRKHVE GQPGHAAKAM SAAVAAAAAT  180
QPTALAASGA GATAAGLTVS QHQQPVKSYA AGATDPCSLQ YNRELVNKQN ESDNMQDSDN  240
LSMLTSMSTR NPASLFPFSK QNNPFEVTSS RPEFGLVSSD SLMSSPHSSL ENVNLLSSQS  300
LNENQSSASL QHFVDWPRTP AQGGLSWADA EDMQAPRSQL SISAPMASSE LSSASTSPIH  360
EKLMLSPLKL SREYSPIGLS ITASRDEVSQ LEANWATMFR DSSMGGPLGE VLTKNGNAEA  420
KNCLSAPLNL LTDFWDSSPG MESSPVGVLQ KTTFGSVSSS TGSSPRMENH GAYDGISNLR  480
DDLGSIVVNH PSIRLL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795429.1	0.0	growth-regulating factor 6-like
Swissprot	Q6AWY3	0.0	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A2T8I0S6	0.0	A0A2T8I0S6_9POAL; Uncharacterized protein
STRING	Pavir.J11763.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	5e-49	growth-regulating factor 2

Link Out ? help Back to Top
Phytozome	Pahal.I01892.2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]