PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I01911.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 358aa    MW: 39105 Da    PI: 6.5154
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I01911.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.84.3e-092693032155
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     + +yps+ e+  LA+++gL+ +q+ +WF N+R ++
  Pahal.I01911.1 269 RWPYPSEMEKIALAESTGLEPKQINNWFINQRKRH 303
                     569*****************************885 PP
2ELK28.33.9e-10223244122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK++Ll+KY+g+Lg+L++E++
  Pahal.I01911.1 223 ELKRRLLKKYRGSLGNLRKELC 244
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.9E-1772116IPR005540KNOX1
PfamPF037901.1E-1774115IPR005540KNOX1
SMARTSM012561.5E-24125176IPR005541KNOX2
PfamPF037914.2E-21129175IPR005541KNOX2
PROSITE profilePS5121310.598223243IPR005539ELK domain
PfamPF037898.6E-7223244IPR005539ELK domain
SMARTSM011881.5E-4223244IPR005539ELK domain
PROSITE profilePS5007112.681243306IPR001356Homeobox domain
SuperFamilySSF466891.37E-19245320IPR009057Homeodomain-like
SMARTSM003891.8E-13245310IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.9E-27248308IPR009057Homeodomain-like
CDDcd000861.43E-12255307No hitNo description
PfamPF059201.1E-15263302IPR008422Homeobox KN domain
PROSITE patternPS000270281304IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEDLSDLGGR GHSGAARPTP RPSLPSSSKV SVQVYTVPSS ASGGGAGAQV VAPATLHESG  60
GSGHGGRAVD LDPVKAKIVS HPRYHGLLAA FLDCHKVGCP PEAAAEIAAA AREREAWQRA  120
AAAGDDARTG PDPELDQFMD SYCELLVAWK EELSRPLREA KEFLTTVESQ LNSITSTGPP  180
LGALISADDK VGLNDLSDDN EEEGSGMESE EALGIDPCSD DKELKRRLLK KYRGSLGNLR  240
KELCKKRKKG KLPKEARQKL LSWWELHYRW PYPSEMEKIA LAESTGLEPK QINNWFINQR  300
KRHWKPSEEM QFAVMDRFHP APQSAAAFYV DARLVGAAAP AMFFARPDHE AHDPWHN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220226DKELKRR
2238247LRKELCKKRK
3244248KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10488233}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798462.10.0homeobox protein knotted-1-like 7
SwissprotQ948L51e-109KNOS7_ORYSJ; Homeobox protein knotted-1-like 7
TrEMBLA0A2S3IIG80.0A0A2S3IIG8_9POAL; Uncharacterized protein
STRINGPavir.J02025.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150631819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-66KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y,Aoki Y,Matsuoka M
    A loss-of-function mutation in the rice KNOX type homeobox gene, OSH3.
    Plant Cell Physiol., 2002. 43(1): p. 44-51
    [PMID:11828021]
  2. Sato Y,Fukuda Y,Hirano HY
    Mutations that cause amino acid substitutions at the invariant positions in homeodomain of OSH3 KNOX protein suggest artificial selection during rice domestication.
    Genes Genet. Syst., 2001. 76(6): p. 381-92
    [PMID:11922107]