PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I01975.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ZF-HD
Protein Properties Length: 226aa    MW: 23375.1 Da    PI: 8.4123
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I01975.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer70.82.3e-221154450
     ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHR 50
                     +Y+eC++NhAa+lG++a DGC+E++p+   +g++aa+ CaACgCHR
  Pahal.I01975.1 11 EVYRECMRNHAAKLGTYASDGCCEYTPD---DGQPAAMLCAACGCHR 54
                    68*************************8...7899***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.0E-181254IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257749.0E-161352IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152318.6671360IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-161354IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466897.27E-1696170IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-2797170IPR009057Homeodomain-like
TIGRFAMsTIGR015651.3E-27108169IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MEQQHQERPR EVYRECMRNH AAKLGTYASD GCCEYTPDDG QPAAMLCAAC GCHRLPRRGR  60
GAPGGGGGLH GAMLTSSPGA PAGYGMHMAM AAAGMGGDGG AHGSAGRRRT RTKFTEEQKE  120
RMARFAERLG WRMPKREPGR APGDDEVGRF CREIGVTRQV FKVWMHNHKA GGGSGGAGAG  180
VAAQTSSSTT RGGGGVGAAG GGSMSPVMGG DGEDDEEVRG SEMCM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A9e-191071761780ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9718751e-152EU971875.1 Zea mays clone 371882 ZF-HD protein dimerisation region containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798159.11e-109zinc-finger homeodomain protein 11-like
SwissprotA2XLF41e-87ZHD11_ORYSI; Zinc-finger homeodomain protein 11
SwissprotQ10DV51e-87ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBLA0A2T8I0V51e-107A0A2T8I0V5_9POAL; Uncharacterized protein
STRINGSb01g010020.18e-99(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92043243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-27homeobox protein 22