PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02010.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 219aa    MW: 23414.8 Da    PI: 10.0697
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02010.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601025.2e-32321321100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     aCa+Ck++rrkC+++C la yfpa+++++f+++h +FG++n++kl+ka  +e  r++a+++l++eA++r rdP +G+++ ++ l+++ + l+ae 
  Pahal.I02010.1  32 ACAVCKHQRRKCEPNCELAAYFPAHRMNDFRALHLVFGVANLTKLIKANATEAaRRRAAETLTWEARWRERDPSEGCYREVSCLRRDNAVLRAEN 126
                     7**********************************************9977766****************************************9 PP

          DUF260  95 allkee 100
                     a+l+++
  Pahal.I02010.1 127 AALRRQ 132
                     999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089120.73231133IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-2832129IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MYMPLALVVP YMHVHAYRGR TTGMTGGGSG GACAVCKHQR RKCEPNCELA AYFPAHRMND  60
FRALHLVFGV ANLTKLIKAN ATEAARRRAA ETLTWEARWR ERDPSEGCYR EVSCLRRDNA  120
VLRAENAALR RQLAEQQQLL LWSRAAAAAA AAPTANSNMA GGCYNGNASG NGLVVAVRPP  180
PHAPAAPAAQ TMLGYRSVPV CPPTPNGRKS APDAPPSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-17251334111LOB family transfactor Ramosa2.1
5ly0_B3e-17251334111LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9732221e-154EU973222.1 Zea mays clone 395148 ramosa 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798343.11e-139LOB domain-containing protein 2-like
TrEMBLA0A2T7C1Z81e-138A0A2T7C1Z8_9POAL; Uncharacterized protein
TrEMBLA0A2T8I0Y01e-138A0A2T8I0Y0_9POAL; Uncharacterized protein
STRINGPavir.J05697.1.p1e-106(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.11e-15LOB domain-containing protein 2