PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02073.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 619aa    MW: 65194.1 Da    PI: 5.1595
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02073.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS466.31.7e-1422366141374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPilk 92 
                     lv++Ll+cAeav+++++++a+al++++  las++g +m+++aayf eALa+r++r        ++p ++s  +  ++++a+ l   f+e +P+lk
  Pahal.I02073.1 236 LVHALLACAEAVQQENFTAAEALVKQIPMLASSQGGAMRKVAAYFGEALARRVYR--------FRPAPDS--SLLDAAFADLLhahFYESCPYLK 320
                     689****************************************************........4444443..34444444433445********* PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     f+h+taNqaIlea++g++rvH++Df+i+qG+QWpaLlqaLa Rp+gpps+R+Tgvg+p+++++++l+++g++La+fA++++v+f+++ lva +l+
  Pahal.I02073.1 321 FAHFTANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDETDALQQVGWKLAQFAHTIRVDFQYRGLVAATLA 415
                     *********************************************************************************************** PP

            GRAS 188 dleleeLrvkp......gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak.. 274
                     dle+ +L+ +        E++aVn+v++lhrll+++++le+    vL +v+ ++P++v+vveqea+hns+sFl+rf+e+l+yys++fdsle    
  Pahal.I02073.1 416 DLEPFMLQPDGedtddePEVIAVNSVFELHRLLAQPGALEK----VLGTVRAVRPRIVTVVEQEANHNSGSFLDRFTESLHYYSTMFDSLEGAgs 506
                     *******65544556689***********************....*********************************************87768 PP

            GRAS 275 ......lpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361
                           +p+++  +++++++++lgr+i+nvvacegaer+erhetl++Wr+rl++aGF+pv+l+++a+kqa++ll+ ++ +dgyrvee++g+l+lg
  Pahal.I02073.1 507 gqsadaAPAAAgGTDQVMSEVYLGRQICNVVACEGAERTERHETLGQWRNRLGRAGFEPVHLGSNAYKQASTLLALFAgGDGYRVEEKDGCLTLG 601
                     88888656555899********************************************************************************* PP

            GRAS 362 WkdrpLvsvSaWr 374
                     W++rpL+++SaWr
  Pahal.I02073.1 602 WHTRPLIATSAWR 614
                     ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120411.2E-283599IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011291.2E-2235117No hitNo description
PROSITE profilePS5098568.47210593IPR005202Transcription factor GRAS
PfamPF035145.9E-140236614IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MKREYQDAGG SGGDMGSSKD KMMPAAAGEQ DEEVDELLAA LGYKVRSSDM ADVAQKLEQL  60
EMAMGMGGVG AAGAAADDGF VSHLATDTVH YNPSDLSSWH AVRAQRAPPP LPPAPPAPRL  120
ASTSSTVTGG ATAGGGYFDI PPAVDSSSST YALKPIPSPV AASADPSTDS TREPKRMRTG  180
GGSTSSSSSS SSSLDGGRAR SSVVEAAPPA TQASAAANAP AVPVVVVDTQ EAGIRLVHAL  240
LACAEAVQQE NFTAAEALVK QIPMLASSQG GAMRKVAAYF GEALARRVYR FRPAPDSSLL  300
DAAFADLLHA HFYESCPYLK FAHFTANQAI LEAFAGCRRV HVVDFGIKQG MQWPALLQAL  360
ALRPGGPPSF RLTGVGPPQP DETDALQQVG WKLAQFAHTI RVDFQYRGLV AATLADLEPF  420
MLQPDGEDTD DEPEVIAVNS VFELHRLLAQ PGALEKVLGT VRAVRPRIVT VVEQEANHNS  480
GSFLDRFTES LHYYSTMFDS LEGAGSGQSA DAAPAAAGGT DQVMSEVYLG RQICNVVACE  540
GAERTERHET LGQWRNRLGR AGFEPVHLGS NAYKQASTLL ALFAGGDGYR VEEKDGCLTL  600
GWHTRPLIAT SAWRMAAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6124361326378Protein SCARECROW
5b3h_A2e-6124361325377Protein SCARECROW
5b3h_D2e-6124361325377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2425300.0AJ242530.1 Zea mays partial d8 gene for gibberellin response modulator.
GenBankBT0542620.0BT054262.1 Zea mays full-length cDNA clone ZM_BFb0203D23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001354393.10.0DELLA protein DWARF8
SwissprotQ9ST480.0DWRF8_MAIZE; DELLA protein DWARF8
TrEMBLA0A1E5VC250.0A0A1E5VC25_9POAL; DELLA protein DWARF8
STRINGGRMZM2G144744_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein
Publications ? help Back to Top
  1. Tenaillon MI, et al.
    Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6
    [PMID:11470895]