PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02078.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TCP
Protein Properties Length: 369aa    MW: 39345 Da    PI: 7.9419
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02078.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP163.79e-511132702136
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 
                      ++kdrhski+T++g+RdRR+Rls+++a++fF+Lqd+LGfdk+skt++WLl+ +k+ai+e++ +  +++sec e++sss s++ + ++       
  Pahal.I02078.1 113 VARKDRHSKICTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNTSKAAIQEIMTD--DASSECaEDGSSSLSVDGKPNPvelglgg 205
                     689*************************************************************..66667999999999999555557788888 PP

             TCP  89 .................kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136
                                      ka+k+a+ +k+++ks +++  ++ke+rakar+rarert+ek+r+++++
  Pahal.I02078.1 206 gdqqpkcndrsegkkpaKARKAATAPKPPRKSGNAHPVPDKETRAKARERARERTKEKHRMRWVK 270
                     8888888999999999666666669*************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136935.255115173IPR017887Transcription factor TCP subgroup
PfamPF036345.5E-45115266IPR005333Transcription factor, TCP
PROSITE profilePS5137011.593246263IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MFPFCDSSSP MDLPLYQQLQ LSPPSPKPDQ SSSFFYYPCS PPFAAAAADA SFHLSYQLGS  60
AAAAATPPQA VIDSPELPAQ PLMEQAPAPA SELDAACANA QGAGVSLDRA SAVARKDRHS  120
KICTAGGMRD RRMRLSLDVA RKFFALQDML GFDKASKTVQ WLLNTSKAAI QEIMTDDASS  180
ECAEDGSSSL SVDGKPNPVE LGLGGGDQQP KCNDRSEGKK PAKARKAATA PKPPRKSGNA  240
HPVPDKETRA KARERARERT KEKHRMRWVK LASAIDVEAA AASVARDRPS SNNLNHHSSS  300
NMACGAAELE ERCSSTLNNG GTRMQEITGA SDVILAFGNG GYGAAGNYYC QEQWDLGGVV  360
FQQNSRFY*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Involved in apical dominance. Represses the growth of axillary organs (e.g. lateral branches), but enables the formation of female inflorescences. Regulates the number and length of axillary branches. {ECO:0000269|PubMed:12524360, ECO:0000269|PubMed:16642024, ECO:0000269|PubMed:17947410, ECO:0000269|PubMed:8536981, ECO:0000269|PubMed:9087405}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432600.0AC243260.1 Panicum virgatum clone PV_ABa103-K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796975.10.0transcription factor TEOSINTE BRANCHED 1-like
SwissprotQ93WI21e-179TB1_MAIZE; Transcription factor TEOSINTE BRANCHED 1
TrEMBLA0A2S3IJI00.0A0A2S3IJI0_9POAL; Uncharacterized protein
STRINGPavir.Ia00838.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72533651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-25TCP domain protein 12
Publications ? help Back to Top
  1. Tenaillon MI, et al.
    Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6
    [PMID:11470895]
  2. Clark RM,Tavaré S,Doebley J
    Estimating a nucleotide substitution rate for maize from polymorphism at a major domestication locus.
    Mol. Biol. Evol., 2005. 22(11): p. 2304-12
    [PMID:16079248]