PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02227.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 265aa    MW: 28900.4 Da    PI: 4.4594
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02227.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.81.1e-16204238133
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                     C+nCgt++  Tp +Rrgp g++tLCnaCGl+++ k
  Pahal.I02227.3 204 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANK 238
                     ********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009797.0E-106398IPR010399Tify domain
PROSITE profilePS5132014.8186398IPR010399Tify domain
PfamPF062001.7E-126697IPR010399Tify domain
PROSITE profilePS5101713.404132174IPR010402CCT domain
PfamPF062035.2E-15132172IPR010402CCT domain
SMARTSM004013.2E-7198250IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.0E-10202244No hitNo description
CDDcd002021.45E-13203242No hitNo description
Gene3DG3DSA:3.30.50.101.7E-14203242IPR013088Zinc finger, NHR/GATA-type
PfamPF003207.4E-14204238IPR000679Zinc finger, GATA-type
PROSITE patternPS003440204231IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MPDADVDVEM RAAAAAPGGD DGEDDTGEEE DDDGDDVYDE DEEERTAPAP AEEPPAPAPV  60
SALPGNPNQL TLLFQGEVYV FESVTPDKVQ AVLLLLGRGE LPPDYAGKVV PSQNENKGYD  120
DILRRTDIPA KRVASLLRFR EKRKERNFDK KIRYAVRKEV ALRMQRRKGQ FAGRASLEGE  180
SPAPGCDPGS QSSGLDFVSR ESKCQNCGTS EKMTPAMRRG PAGPRTLCNA CGLMWANKDM  240
LRQQFCFDVS VLAAVVYAWF LVTA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9649660.0EU964966.1 Zea mays clone 282829 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793442.11e-135GATA transcription factor 18-like isoform X1
SwissprotQ10F251e-116GAT18_ORYSJ; GATA transcription factor 18
TrEMBLA0A2T7C2L20.0A0A2T7C2L2_9POAL; Uncharacterized protein
STRINGSb01g011840.11e-127(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-64ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]