PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02244.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 648aa    MW: 71352 Da    PI: 5.8792
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02244.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.31.3e-084024391954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +e+  L++++gLt +q+++WF N R +
  Pahal.I02244.1 402 FEHflHPYPKDSEKLMLSRQTGLTRSQISNWFINARVR 439
                     664559******************************88 PP
2BELL120.76.5e-39265336172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     e+qelq+k akL+ +l+eVd++Yk+y++q+q v+ssF++vag g+akpYt++Al++iSrhFrcLkdai +qi
  Pahal.I02244.1 265 EKQELQNKMAKLMAMLDEVDRKYKHYYHQMQLVMSSFDMVAGSGAAKPYTAVALQTISRHFRCLKDAINDQI 336
                     689*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.0E-56189334IPR006563POX domain
PfamPF075263.0E-50195332IPR006563POX domain
PROSITE profilePS5007112.001380443IPR001356Homeobox domain
SMARTSM003894.8E-9383447IPR001356Homeobox domain
CDDcd000862.05E-12383444No hitNo description
SuperFamilySSF466897.7E-17384450IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-27386449IPR009057Homeodomain-like
PfamPF059202.8E-17400439IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MATYYSSPGS ERDSQTMYST ESGNASYPMP SALGNLLYPN NASSGPYTEF SGIIQPQQNF  60
MELPGHPSAM SHDSSSNEAT NMGTSLTEQR SFGPLKDMRN EMLMHLMDGA HSSGSDLIHS  120
DAHNTAQVEF GMLNNHNSTS VPSAPGQGLS LSLNTHILAP SYPYWSAKPD LLTPNSYQGD  180
DNRMKGMQSE ASRAIRNSKY LKAAQELLDE IVSVWKSVKQ KADKGPAEAG KGDGKETEGG  240
IKSEGVSSNP QESGANAAAE LSTAEKQELQ NKMAKLMAML DEVDRKYKHY YHQMQLVMSS  300
FDMVAGSGAA KPYTAVALQT ISRHFRCLKD AINDQIGVIR KKLGEDDNTS GKEGKLTRLR  360
YIDQQIRQQR AFQQYGMLQQ NAWRPQRGLP ENSVSILRAW LFEHFLHPYP KDSEKLMLSR  420
QTGLTRSQIS NWFINARVRL WKPMIEDMYR EEVGDGELDS NSSSDNGARS KDKAPSSEEK  480
EDLKTSTSQA CQSNQLDESK ANVGGMMSLN GAPAGGFHEA NPEDSFMSLM LKAQRPGETD  540
GSGLLHHAVA HHSDESTQFM AYHLAELGRY GNNNVSLTLG LQHAENSLSS VPNTQPGFPG  600
VRDEDIYNAT APLNVTSTSS DYESTNQMDQ QQRQRFEPSP LMHDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A5e-16389446158Homeobox protein Meis1
4xrs_B5e-16389446158Homeobox protein Meis1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9571390.0EU957139.1 Zea mays clone 1583941 BEL1-related homeotic protein 30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792966.10.0BEL1-like homeodomain protein 7
RefseqXP_025792967.10.0BEL1-like homeodomain protein 7
TrEMBLA0A2S3IJC10.0A0A2S3IJC1_9POAL; Uncharacterized protein
STRINGPavir.Ib04256.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-117BEL1-like homeodomain 6