PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02265.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRF
Protein Properties Length: 504aa    MW: 55420.4 Da    PI: 9.955
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02265.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC74.98.3e-24235279145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCs+++++++k+CErH++r+r+rsrk++e+
  Pahal.I02265.1 235 DPEPGRCRRTDGKKWRCSKEAMADHKYCERHINRNRHRSRKPVEN 279
                     79****************************************997 PP
2QLQ54.92.7e-19177212237
             QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                     +FT++Q+++L++Q+l+yKyL a++P+P+ Ll  i+k
  Pahal.I02265.1 177 PFTPSQWMELEHQALIYKYLHAKAPIPSSLLISISK 212
                     9******************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.2E-10176212IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.1E-13177210IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.433177212IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.803235279IPR014977WRC domain
PfamPF088794.6E-20236278IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MKGPVLFKGH PLVPPKSHHT YPAWPVPPTR KAHPPSLLSL SLSLALHHPQ KSTRLSVPND  60
AHHFHPRSTL SHQPEPPLLA QMSATEFRAA GAAAMELGEL MGLQQGIGGT VPSPGEGDLG  120
LLKRGGEAAA AAAFHPSPFL DEQKMLRFSK AAQALPSGLD LGRPNEQDFL LSRTKRPFTP  180
SQWMELEHQA LIYKYLHAKA PIPSSLLISI SKSFRSSNRV SWRPLYQGYT NADSDPEPGR  240
CRRTDGKKWR CSKEAMADHK YCERHINRNR HRSRKPVENQ PKKTAKEAPA AAGSLPCAVS  300
QGSLKKAKVN DSKPGTVSYW TDSLNRTMLS KEKANQPTED NNIESLGNST NRQPTLSLLS  360
QLKQHNKPEK YSPAVDSQSI SSDTILKAWE SRNQQSHKSI SSTQLHGAES LQSVLQNFSL  420
AKNENTDSEK NKYSDSMLVS STFYHLAQGP RTTCLTSNMT QVQADCISSS WEMPQGGPLG  480
EILTNSKNSD DSNKKCESSS YGW*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792701.10.0growth-regulating factor 9-like
SwissprotQ9FRG80.0GRF9_ORYSJ; Growth-regulating factor 9
TrEMBLA0A2S3IJY40.0A0A2S3IJY4_9POAL; Uncharacterized protein
STRINGPavir.Ia01043.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131242529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.13e-34growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]