PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02354.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 195aa    MW: 20690.1 Da    PI: 7.5369
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02354.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.31.3e-22106163258
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTT.EEEEEEES--SS CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpk.vveitYegeHnh 58 
                     +Dgy+W+KYGqK +k+ +  rsY+rC ++ C +kkkve   +dp+ ++ ++Yeg H+h
  Pahal.I02354.1 106 EDGYEWKKYGQKFIKNIQKIRSYFRCRHRLCGAKKKVEWHPSDPSgALRVVYEGAHQH 163
                     7******************************************985789********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-24100166IPR003657WRKY domain
PROSITE profilePS5081118.647100166IPR003657WRKY domain
SuperFamilySSF1182904.58E-21101166IPR003657WRKY domain
SMARTSM007747.8E-25105165IPR003657WRKY domain
PfamPF031061.2E-20106163IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MFLFTFFSLR CFDVCLASNS VLGLATYHGF GSHAWFAIGF SNFHVATCME RGSAGDRNQE  60
KEDEAVVAAA AAAAAEAGNG SQEDEAVVAA AAAAEAGNGS QLVMPEDGYE WKKYGQKFIK  120
NIQKIRSYFR CRHRLCGAKK KVEWHPSDPS GALRVVYEGA HQHGSPPSSS AAAAGGASNK  180
YELGAQYFGG ARPQ*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9706335e-84EU970633.1 Zea mays clone 348246 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791515.11e-142probable WRKY transcription factor 50 isoform X1
TrEMBLA0A2S3IJK21e-141A0A2S3IJK2_9POAL; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101583444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.15e-14WRKY DNA-binding protein 48