PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02354.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 135aa    MW: 14197.7 Da    PI: 9.6444
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02354.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.45.8e-2346103258
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTT.EEEEEEES--SS CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpk.vveitYegeHnh 58 
                     +Dgy+W+KYGqK +k+ +  rsY+rC ++ C +kkkve   +dp+ ++ ++Yeg H+h
  Pahal.I02354.3  46 EDGYEWKKYGQKFIKNIQKIRSYFRCRHRLCGAKKKVEWHPSDPSgALRVVYEGAHQH 103
                     7******************************************985789********* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-2440106IPR003657WRKY domain
PROSITE profilePS5081118.64740106IPR003657WRKY domain
SuperFamilySSF1182901.96E-2141106IPR003657WRKY domain
SMARTSM007747.8E-2545105IPR003657WRKY domain
PfamPF031065.5E-2146103IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MASSSSSQPN AIGSAGDRNQ EKEDEAVVAA AAAAAAGNGS QLVMPEDGYE WKKYGQKFIK  60
NIQKIRSYFR CRHRLCGAKK KVEWHPSDPS GALRVVYEGA HQHGSPPSSS AAAAGGASNK  120
YELGAQYFGG ARPQ*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9706333e-84EU970633.1 Zea mays clone 348246 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791517.17e-69WRKY transcription factor 23-like isoform X3
TrEMBLA0A3L6S8311e-76A0A3L6S831_PANMI; Putative WRKY transcription factor 33
STRINGSi038001m2e-60(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.12e-14WRKY DNA-binding protein 48