PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02354.4
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 126aa    MW: 13453 Da    PI: 9.6441
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02354.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.74.9e-233794258
                    --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTT.EEEEEEES--SS CS
            WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpk.vveitYegeHnh 58
                    +Dgy+W+KYGqK +k+ +  rsY+rC ++ C +kkkve   +dp+ ++ ++Yeg H+h
  Pahal.I02354.4 37 EDGYEWKKYGQKFIKNIQKIRSYFRCRHRLCGAKKKVEWHPSDPSgALRVVYEGAHQH 94
                    7******************************************985789********* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-243197IPR003657WRKY domain
PROSITE profilePS5081118.6473197IPR003657WRKY domain
SuperFamilySSF1182901.57E-213297IPR003657WRKY domain
SMARTSM007747.8E-253696IPR003657WRKY domain
PfamPF031064.7E-213794IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MERGSAGDRN QEKEDEAVVA AAAAAAAGNG SQLVMPEDGY EWKKYGQKFI KNIQKIRSYF  60
RCRHRLCGAK KKVEWHPSDP SGALRVVYEG AHQHGSPPSS SAAAAGGASN KYELGAQYFG  120
GARPQ*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9706333e-84EU970633.1 Zea mays clone 348246 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791515.14e-62probable WRKY transcription factor 50 isoform X1
TrEMBLA0A3L6S8316e-73A0A3L6S831_PANMI; Putative WRKY transcription factor 33
STRINGSi038001m3e-57(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.23e-14WRKY DNA-binding protein 57