PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02392.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family YABBY
Protein Properties Length: 197aa    MW: 21857 Da    PI: 9.5205
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02392.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY236.65.4e-73121706170
           YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100
                     ++e+vCyv+CnfCntilavsvPs+s++++vtvrCGhCt llsvnl+   q l++++h      + ++e+ kv++ ++++n +++  + ++ ++ +
  Pahal.I02392.1  12 APEHVCYVHCNFCNTILAVSVPSNSMLNIVTVRCGHCTGLLSVNLRGLIQSLPVQNH-----SQLVQENFKVHNISFTENLSEYAPSPSKYRMPM 101
                     79******************************************************9.....566999****************99999999988 PP

           YABBY 101 l.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     + s++ d++  ++ ++   PekrqrvPsaynrfikeei+rikasnP ishreafs+aaknWahfP+ihfgl
  Pahal.I02392.1 102 MfSTKGDQD--HMLHIRAAPEKRQRVPSAYNRFIKEEIRRIKASNPAISHREAFSTAAKNWAHFPNIHFGL 170
                     764443333..34457779**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.9E-7013170IPR006780YABBY protein
SuperFamilySSF470954.58E-7117164IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.6E-4119164IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MSAQIAPAPA PAPEHVCYVH CNFCNTILAV SVPSNSMLNI VTVRCGHCTG LLSVNLRGLI  60
QSLPVQNHSQ LVQENFKVHN ISFTENLSEY APSPSKYRMP MMFSTKGDQD HMLHIRAAPE  120
KRQRVPSAYN RFIKEEIRRI KASNPAISHR EAFSTAAKNW AHFPNIHFGL GTHESSKKLD  180
EAIGAAGRPQ KVQDLY*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795817.11e-146protein YABBY 2-like isoform X1
SwissprotQ10FZ71e-105YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A2S3IJP71e-145A0A2S3IJP7_9POAL; Uncharacterized protein
STRINGPavir.Ia01130.1.p1e-126(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.26e-56YABBY family protein