PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02392.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family YABBY
Protein Properties Length: 196aa    MW: 21785.9 Da    PI: 9.5205
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02392.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY238.41.5e-73121696170
           YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100
                     ++e+vCyv+CnfCntilavsvPs+s++++vtvrCGhCt llsvnl+   q l++++h      + ++e+ kv++ ++++n +++  + ++ ++ +
  Pahal.I02392.2  12 APEHVCYVHCNFCNTILAVSVPSNSMLNIVTVRCGHCTGLLSVNLRGLIQSLPVQNH-----SQLVQENFKVHNISFTENLSEYAPSPSKYRMPM 101
                     79******************************************************9.....566999****************99999999988 PP

           YABBY 101 l..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     +  ++ +++++ +    ir PekrqrvPsaynrfikeei+rikasnP ishreafs+aaknWahfP+ihfgl
  Pahal.I02392.2 102 MfsTKGDQDHMLH----IRAPEKRQRVPSAYNRFIKEEIRRIKASNPAISHREAFSTAAKNWAHFPNIHFGL 169
                     8644444555554....9****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.7E-7113169IPR006780YABBY protein
SuperFamilySSF470952.36E-7113163IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.4E-4116163IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MSAQIAPAPA PAPEHVCYVH CNFCNTILAV SVPSNSMLNI VTVRCGHCTG LLSVNLRGLI  60
QSLPVQNHSQ LVQENFKVHN ISFTENLSEY APSPSKYRMP MMFSTKGDQD HMLHIRAPEK  120
RQRVPSAYNR FIKEEIRRIK ASNPAISHRE AFSTAAKNWA HFPNIHFGLG THESSKKLDE  180
AIGAAGRPQK VQDLY*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795818.11e-146protein YABBY 2-like isoform X2
SwissprotQ10FZ71e-107YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A2S3IJN61e-144A0A2S3IJN6_9POAL; Uncharacterized protein
STRINGPavir.Ia01130.1.p1e-128(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.22e-57YABBY family protein