PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I02392.3

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

YABBY

Protein Properties

Length: 194aa MW: 21516.6 Da PI: 9.5205

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I02392.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	232.9	7.6e-72	12	167	6	170
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100 ++e+vCyv+CnfCntilavsvPs+s++++vtvrCGhCt llsvnl+ q l++++h +e+ kv++ ++++n +++ + ++ ++ + Pahal.I02392.3 12 APEHVCYVHCNFCNTILAVSVPSNSMLNIVTVRCGHCTGLLSVNLRGLIQSLPVQNH--------SQENFKVHNISFTENLSEYAPSPSKYRMPM 98 79****************************************************9........88999*********999999999988 PP YABBY 101 l.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + s++ d++ ++ ++ PekrqrvPsaynrfikeei+rikasnP ishreafs+aaknWahfP+ihfgl Pahal.I02392.3 99 MfSTKGDQD--HMLHIRAAPEKRQRVPSAYNRFIKEEIRRIKASNPAISHREAFSTAAKNWAHFPNIHFGL 167 764443333..34457779************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.1E-69	13	167	IPR006780	YABBY protein
SuperFamily	SSF47095	4.45E-7	114	161	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.5E-4	116	161	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MSAQIAPAPA PAPEHVCYVH CNFCNTILAV SVPSNSMLNI VTVRCGHCTG LLSVNLRGLI 60 QSLPVQNHSQ ENFKVHNISF TENLSEYAPS PSKYRMPMMF STKGDQDHML HIRAAPEKRQ 120 RVPSAYNRFI KEEIRRIKAS NPAISHREAF STAAKNWAHF PNIHFGLGTH ESSKKLDEAI 180 GAAGRPQKVQ DLY*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795819.1	1e-144	protein YABBY 2-like isoform X3
Swissprot	Q10FZ7	1e-107	YAB2_ORYSJ; Protein YABBY 2
TrEMBL	A0A2S3IJP8	1e-143	A0A2S3IJP8_9POAL; Uncharacterized protein
STRING	Pavir.Ia01130.1.p	1e-122	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	4e-57	YABBY family protein

Link Out ? help Back to Top
Phytozome	Pahal.I02392.3