PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02392.4
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family YABBY
Protein Properties Length: 161aa    MW: 18134.7 Da    PI: 10.3191
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02392.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY178.34.4e-55113431170
           YABBY  31 lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl.senedeevprvppvirPPekrqr 124
                     ++++vtvrCGhCt llsvnl+   q l++++h      + ++e+ kv++ ++++n +++  + ++ ++ ++ s++ d++  ++ ++   Pekrqr
  Pahal.I02392.4   1 MLNIVTVRCGHCTGLLSVNLRGLIQSLPVQNH-----SQLVQENFKVHNISFTENLSEYAPSPSKYRMPMMfSTKGDQD--HMLHIRAAPEKRQR 88 
                     579****************************9.....566999****************99999999988764443333..34457779****** PP

           YABBY 125 vPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     vPsaynrfikeei+rikasnP ishreafs+aaknWahfP+ihfgl
  Pahal.I02392.4  89 VPSAYNRFIKEEIRRIKASNPAISHREAFSTAAKNWAHFPNIHFGL 134
                     ********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.0E-521134IPR006780YABBY protein
SuperFamilySSF470953.14E-781128IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.8E-483128IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MLNIVTVRCG HCTGLLSVNL RGLIQSLPVQ NHSQLVQENF KVHNISFTEN LSEYAPSPSK  60
YRMPMMFSTK GDQDHMLHIR AAPEKRQRVP SAYNRFIKEE IRRIKASNPA ISHREAFSTA  120
AKNWAHFPNI HFGLGTHESS KKLDEAIGAA GRPQKVQDLY *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795817.11e-118protein YABBY 2-like isoform X1
SwissprotQ10FZ75e-83YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A2S3IJP71e-117A0A2S3IJP7_9POAL; Uncharacterized protein
TrEMBLA0A2T7C3471e-117A0A2T7C347_9POAL; Uncharacterized protein
STRINGPavir.Ia01130.1.p1e-105(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.26e-43YABBY family protein