PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I02392.5

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

YABBY

Protein Properties

Length: 160aa MW: 18063.7 Da PI: 10.3191

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I02392.5	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	180.1	1.3e-55	1	133	31	170
YABBY 31 lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl..senedeevprvppvirPPekrq 123 ++++vtvrCGhCt llsvnl+ q l++++h + ++e+ kv++ ++++n +++ + ++ ++ ++ ++ +++++ + ir Pekrq Pahal.I02392.5 1 MLNIVTVRCGHCTGLLSVNLRGLIQSLPVQNH-----SQLVQENFKVHNISFTENLSEYAPSPSKYRMPMMfsTKGDQDHMLH----IRAPEKRQ 86 579**************************9.....566999************999999999888644444555554....9*** PP YABBY 124 rvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 rvPsaynrfikeei+rikasnP ishreafs+aaknWahfP+ihfgl Pahal.I02392.5 87 RVPSAYNRFIKEEIRRIKASNPAISHREAFSTAAKNWAHFPNIHFGL 133 *******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.0E-53	1	133	IPR006780	YABBY protein
SuperFamily	SSF47095	1.57E-7	77	127	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	9.5E-5	80	127	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MLNIVTVRCG HCTGLLSVNL RGLIQSLPVQ NHSQLVQENF KVHNISFTEN LSEYAPSPSK 60 YRMPMMFSTK GDQDHMLHIR APEKRQRVPS AYNRFIKEEI RRIKASNPAI SHREAFSTAA 120 KNWAHFPNIH FGLGTHESSK KLDEAIGAAG RPQKVQDLY*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795818.1	1e-117	protein YABBY 2-like isoform X2
Swissprot	Q10FZ7	9e-85	YAB2_ORYSJ; Protein YABBY 2
TrEMBL	A0A2T7C330	1e-116	A0A2T7C330_9POAL; Uncharacterized protein
STRING	Pavir.Ia01130.1.p	1e-107	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-44	YABBY family protein

Link Out ? help Back to Top
Phytozome	Pahal.I02392.5