PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02392.6
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family YABBY
Protein Properties Length: 158aa    MW: 17794.3 Da    PI: 10.3191
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02392.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY174.75.9e-54113131170
           YABBY  31 lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekl.senedeevprvppvirPPekrqr 124
                     ++++vtvrCGhCt llsvnl+   q l++++h         +e+ kv++ ++++n +++  + ++ ++ ++ s++ d++  ++ ++   Pekrqr
  Pahal.I02392.6   1 MLNIVTVRCGHCTGLLSVNLRGLIQSLPVQNH--------SQENFKVHNISFTENLSEYAPSPSKYRMPMMfSTKGDQD--HMLHIRAAPEKRQR 85 
                     579****************************9........88999*************999999999988764443333..34457779****** PP

           YABBY 125 vPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                     vPsaynrfikeei+rikasnP ishreafs+aaknWahfP+ihfgl
  Pahal.I02392.6  86 VPSAYNRFIKEEIRRIKASNPAISHREAFSTAAKNWAHFPNIHFGL 131
                     ********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046909.6E-521131IPR006780YABBY protein
SuperFamilySSF470952.88E-778125IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.7E-480125IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MLNIVTVRCG HCTGLLSVNL RGLIQSLPVQ NHSQENFKVH NISFTENLSE YAPSPSKYRM  60
PMMFSTKGDQ DHMLHIRAAP EKRQRVPSAY NRFIKEEIRR IKASNPAISH REAFSTAAKN  120
WAHFPNIHFG LGTHESSKKL DEAIGAAGRP QKVQDLY*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795819.11e-116protein YABBY 2-like isoform X3
SwissprotQ10FZ71e-84YAB2_ORYSJ; Protein YABBY 2
TrEMBLA0A2S3IJP81e-114A0A2S3IJP8_9POAL; Uncharacterized protein
STRINGPavir.Ia01130.1.p1e-101(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.23e-44YABBY family protein