PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02445.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 327aa    MW: 35955.8 Da    PI: 8.6998
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02445.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding315.8e-10555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     ++rWT eE+  l  +++++G g W+tI +          R+  ++k++w++
   Pahal.I02445.1  5 KQRWTSEEEAALRAGIARHGVGKWRTILKDPDfsstlCYRSNVDLKDKWRN 55
                     79****************************999999978**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.34161IPR017930Myb domain
SuperFamilySSF466897.18E-15261IPR009057Homeodomain-like
SMARTSM007172.4E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-13556IPR009057Homeodomain-like
PfamPF002491.2E-6556IPR001005SANT/Myb domain
CDDcd116602.34E-20657No hitNo description
Gene3DG3DSA:1.10.10.102.8E-17119192IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.12E-16119194IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005261.5E-11120185IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150423.783122190IPR005818Linker histone H1/H5, domain H15
PfamPF005381.1E-9123183IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGAPKQRWTS EEEAALRAGI ARHGVGKWRT ILKDPDFSST LCYRSNVDLK DKWRNMNVIV  60
STSSSRDKGK AAVKKIRTTP KNNEHTTAIS IVTSDIDDEI VDDKPVASVP SEAQNASNPK  120
KSHSRLDNII MEAIKSLNEP TGSHRTTIAN YIEEQYWPPS DFDHLLSAKL KDLATIGKLI  180
KVNRKYRIAP SSPNLEGRSP KMLLLEDLQR EPIKMGNNDS KTLTRSQVDA ELARMATMTA  240
EEASAAAARA VAEAEAIMAE AEAAAREAEA AEADAQAAQA FAEAAFLTLK NRNAAKLVIV  300
LVHRSLCYMS YCPFTCRARF HNPFCN*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0620590.0BT062059.1 Zea mays full-length cDNA clone ZM_BFb0211A14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796390.10.0single myb histone 6 isoform X2
SwissprotC0HIA31e-164SMH6_MAIZE; Single myb histone 6
TrEMBLA0A3L6S7230.0A0A3L6S723_PANMI; Uncharacterized protein
STRINGSi036471m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-63telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]