PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02531.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 324aa    MW: 37456.1 Da    PI: 9.3625
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02531.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3612e-1927115198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     ffkvl  +    + rl +p kf++++ g     kt++le+++g +++v++   k+ +++vl++GWk F+ a++Lk  Df+vFk+dg+ +   +v 
  Pahal.I02531.2  27 FFKVL--AGD-FRERLGIPDKFVQHIRGR--IAKTVKLESRTGCTFDVEV--AKSLDKVVLQTGWKAFACAHDLKMWDFLVFKYDGTPRL--KVL 112
                     66666..344.4567********888777..6679***************..********************************985555..888 PP

                     EE- CS
              B3  96 vfr 98 
                     +f+
  Pahal.I02531.2 113 IFD 115
                     886 PP
2B344.92.1e-142583223699
                     EEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  36 ltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       l +  g+sWev++ ++k s+     l kGWk+F+++n+L++gD ++F+l +++e +++v+++r+
  Pahal.I02531.2 258 TLLLQHLGKSWEVRCHIQK-SNFpsKRLLKGWKQFARDNNLQVGDLCLFELLENREYTMNVHIIRE 322
                     34555689*******5532.2333456778*********************9999999*****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-2121119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.46224117IPR003340B3 DNA binding domain
SuperFamilySSF1019361.31E-2025124IPR015300DNA-binding pseudobarrel domain
CDDcd100174.88E-2125115No hitNo description
PfamPF023623.3E-1627115IPR003340B3 DNA binding domain
SMARTSM010196.1E-927117IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-20219322IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.47E-18220321IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.308226323IPR003340B3 DNA binding domain
CDDcd100174.69E-15228321No hitNo description
SMARTSM010197.9E-7229323IPR003340B3 DNA binding domain
PfamPF023624.5E-13237322IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MRKPGKRCKE TDAHYYWNRS DEHDRYFFKV LAGDFRERLG IPDKFVQHIR GRIAKTVKLE  60
SRTGCTFDVE VAKSLDKVVL QTGWKAFACA HDLKMWDFLV FKYDGTPRLK VLIFDLSCCE  120
KVLPCHTRDR GEGEEQIENS RSCDDFPMKS PGNKRKAWKQ REGCMNANTS STSLSDSSGG  180
SMSPEDQKSH SVPSYILPRR TFLTFELKKK LKEKVRAICS KTPIYGCVMK KTSIEGKPQT  240
MDISGEYADV YLPFDDQTLL LQHLGKSWEV RCHIQKSNFP SKRLLKGWKQ FARDNNLQVG  300
DLCLFELLEN REYTMNVHII REK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796557.10.0putative B3 domain-containing protein Os03g0621600 isoform X1
SwissprotQ851V58e-96Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLA0A2S3IK340.0A0A2S3IK34_9POAL; Uncharacterized protein
STRINGPavir.Ia01270.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-14B3 family protein