PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02531.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 230aa    MW: 26456.4 Da    PI: 8.7843
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02531.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.81.1e-141642283699
                     EEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  36 ltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       l +  g+sWev++ ++k s+     l kGWk+F+++n+L++gD ++F+l +++e +++v+++r+
  Pahal.I02531.3 164 TLLLQHLGKSWEVRCHIQK-SNFpsKRLLKGWKQFARDNNLQVGDLCLFELLENREYTMNVHIIRE 228
                     34555689*******5532.2333456778*********************9999999*****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.0E-4333IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-20125228IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-19126227IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.308132229IPR003340B3 DNA binding domain
CDDcd100174.77E-16134227No hitNo description
SMARTSM010197.9E-7135229IPR003340B3 DNA binding domain
PfamPF023622.3E-13143228IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MWDFLVFKYD GTPRLKVLIF DLSCCEKVLP CHTRDRGEGE EQIENSRSCD DFPMKSPGNK  60
RKAWKQREGC MNANTSSTSL SDSSGGSMSP EDQKSHSVPS YILPRRTFLT FELKKKLKEK  120
VRAICSKTPI YGCVMKKTSI EGKPQTMDIS GEYADVYLPF DDQTLLLQHL GKSWEVRCHI  180
QKSNFPSKRL LKGWKQFARD NNLQVGDLCL FELLENREYT MNVHIIREK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796558.11e-172putative B3 domain-containing protein Os03g0621600 isoform X2
TrEMBLA0A2S3IK361e-171A0A2S3IK36_9POAL; Uncharacterized protein
STRINGPavir.Ib03970.1.p1e-131(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-09related to vernalization1 1