PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02531.5
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 306aa    MW: 34943.3 Da    PI: 9.4292
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02531.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3573.6e-1817971298
                    HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                    ++ +  +p kf++++ g     kt++le+++g +++v++   k+ +++vl++GWk F+ a++Lk  Df+vFk+dg+ +   +v +f+
  Pahal.I02531.5 17 SRFWQGIPDKFVQHIRGR--IAKTVKLESRTGCTFDVEV--AKSLDKVVLQTGWKAFACAHDLKMWDFLVFKYDGTPRL--KVLIFD 97
                    555668******888777..6679***************..********************************985555..888886 PP
2B3451.9e-142403043699
                     EEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  36 ltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                       l +  g+sWev++ ++k s+     l kGWk+F+++n+L++gD ++F+l +++e +++v+++r+
  Pahal.I02531.5 240 TLLLQHLGKSWEVRCHIQK-SNFpsKRLLKGWKQFARDNNLQVGDLCLFELLENREYTMNVHIIRE 304
                     34555689*******5532.2333456778*********************9999999*****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.997699IPR003340B3 DNA binding domain
SMARTSM010196.6E-7799IPR003340B3 DNA binding domain
CDDcd100171.07E-19797No hitNo description
SuperFamilySSF1019367.65E-199106IPR015300DNA-binding pseudobarrel domain
PfamPF023623.6E-151597IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-1816101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-20201304IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-18202303IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.308208305IPR003340B3 DNA binding domain
CDDcd100171.80E-15210303No hitNo description
SMARTSM010197.9E-7211305IPR003340B3 DNA binding domain
PfamPF023624.1E-13219304IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MHITTGIVRM STTGISSRFW QGIPDKFVQH IRGRIAKTVK LESRTGCTFD VEVAKSLDKV  60
VLQTGWKAFA CAHDLKMWDF LVFKYDGTPR LKVLIFDLSC CEKVLPCHTR DRGEGEEQIE  120
NSRSCDDFPM KSPGNKRKAW KQREGCMNAN TSSTSLSDSS GGSMSPEDQK SHSVPSYILP  180
RRTFLTFELK KKLKEKVRAI CSKTPIYGCV MKKTSIEGKP QTMDISGEYA DVYLPFDDQT  240
LLLQHLGKSW EVRCHIQKSN FPSKRLLKGW KQFARDNNLQ VGDLCLFELL ENREYTMNVH  300
IIREK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796558.10.0putative B3 domain-containing protein Os03g0621600 isoform X2
SwissprotQ851V51e-80Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLA0A2S3IK360.0A0A2S3IK36_9POAL; Uncharacterized protein
STRINGPavir.Ia01270.1.p1e-170(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-11B3 family protein