PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I02531.6

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 251aa MW: 28741.1 Da PI: 9.5623

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I02531.6	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	61.7	1.2e-19	27	115	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffkvl + + rl +p kf++++ g kt++le+++g +++v++ k+ +++vl++GWk F+ a++Lk Df+vFk+dg+ + +v Pahal.I02531.6 27 FFKVL--AGD-FRERLGIPDKFVQHIRGR--IAKTVKLESRTGCTFDVEV--AKSLDKVVLQTGWKAFACAHDLKMWDFLVFKYDGTPRL--KVL 112 66666..444.4567******888777..6679***********..******************************985555..888 PP EE- CS B3 96 vfr 98 +f+ Pahal.I02531.6 113 IFD 115 886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.3E-21	21	119	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.462	24	117	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	7.65E-21	25	124	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.06E-21	25	115	No hit	No description
Pfam	PF02362	2.0E-16	27	115	IPR003340	B3 DNA binding domain
SMART	SM01019	6.1E-9	27	117	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MRKPGKRCKE TDAHYYWNRS DEHDRYFFKV LAGDFRERLG IPDKFVQHIR GRIAKTVKLE 60 SRTGCTFDVE VAKSLDKVVL QTGWKAFACA HDLKMWDFLV FKYDGTPRLK VLIFDLSCCE 120 KVLPCHTRDR GEGEEQIENS RSCDDFPMKS PGNKRKAWKQ REGCMNANTS STSLSDSSGG 180 SMSPEDQKSH SVPSYILPRR TFLTFELKKK LKEKVRAICS KTPIYGCVMK KTSIEGKPQT 240 MVSQETLFLD *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796557.1	0.0	putative B3 domain-containing protein Os03g0621600 isoform X1
TrEMBL	A0A2S3IK24	0.0	A0A2S3IK24_9POAL; Uncharacterized protein
STRING	Pavir.Ia01270.1.p	1e-146	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	2e-14	B3 family protein

Link Out ? help Back to Top
Phytozome	Pahal.I02531.6