PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02533.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 320aa    MW: 36968.4 Da    PI: 9.2967
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02533.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.81.3e-15897199
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                    ffkv+   +   ++r+++p kfa+++  k ++  +++l+  +g + +v +   +++++ vl++GW+ F + ++++  D +vF+++g+  f++ v vf
  Pahal.I02533.1  8 FFKVM---MGDFRSRMTIPDKFAQRFRDKIRG--KIKLKVYNGSTCTVVV--ARHRNKLVLEAGWEAFISTHDIRLADLLVFRYNGN--FQFEVLVF 95
                    67777...5556678********999766444..79999999********..*******************************9885..55588888 PP

                    -S CS
              B3 98 rk 99
                    + 
  Pahal.I02533.1 96 DP 97
                    75 PP
2B349.57.8e-162413182298
                     H.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
              B3  22 faeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                     f++++  ++ + es+ l+l+ ++g++W+v l+   k++++ + +GWkeFv++n+L+ gD+++F+l ++ +   ++++++r
  Pahal.I02533.1 241 FCRKYanQYLPSESQILRLQ-QHGKVWQVLLR-ATKRNSIRFCRGWKEFVSDNRLQIGDICLFELLKNeKMLAMNIHIIR 318
                     55555554445566667755.6*********5.44445688999********************9988788888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.14E-212100IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.2E-213100IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.011598IPR003340B3 DNA binding domain
CDDcd100172.27E-17696No hitNo description
PfamPF023622.6E-12896IPR003340B3 DNA binding domain
SMARTSM010197.0E-8898IPR003340B3 DNA binding domain
SuperFamilySSF1019361.49E-19218317IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-22218318IPR015300DNA-binding pseudobarrel domain
CDDcd100175.97E-17221315No hitNo description
SMARTSM010195.6E-4222318IPR003340B3 DNA binding domain
PROSITE profilePS5086312.605224319IPR003340B3 DNA binding domain
PfamPF023622.1E-14239319IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MDDRCKYFFK VMMGDFRSRM TIPDKFAQRF RDKIRGKIKL KVYNGSTCTV VVARHRNKLV  60
LEAGWEAFIS THDIRLADLL VFRYNGNFQF EVLVFDPSCC VKESSNVAQN CCDHVQVQQR  120
HRDLLDISSD SGDDQEPMQS SGSEDPTPAE KKGPNQSTKK TNTSSLTCHL NAPEFADVYS  180
SENDQEISSM TSYIFSPFTH LTQKQRMKVE KRVQDICSSI PIFGSVMTKC NITRNPRYLG  240
FCRKYANQYL PSESQILRLQ QHGKVWQVLL RATKRNSIRF CRGWKEFVSD NRLQIGDICL  300
FELLKNEKML AMNIHIIRK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796316.10.0putative B3 domain-containing protein Os03g0621600 isoform X1
RefseqXP_025796317.10.0putative B3 domain-containing protein Os03g0621600 isoform X1
RefseqXP_025796318.10.0putative B3 domain-containing protein Os03g0621600 isoform X1
TrEMBLA0A2S3IK330.0A0A2S3IK33_9POAL; Uncharacterized protein
STRINGPavir.Ia01271.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-23B3 family protein