PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I02533.6

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 317aa MW: 36621 Da PI: 9.4285

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I02533.6	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.8	1.3e-15	8	97	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ffkv+ + ++r+++p kfa+++ k ++ +++l+ +g + +v + +++++ vl++GW+ F + ++++ D +vF+++g+ f++ v vf Pahal.I02533.6 8 FFKVM---MGDFRSRMTIPDKFAQRFRDKIRG--KIKLKVYNGSTCTVVV--ARHRNKLVLEAGWEAFISTHDIRLADLLVFRYNGN--FQFEVLVF 95 67777...5556678******999766444..79999999****..*****************************9885..55588888 PP -S CS B3 98 rk 99 + Pahal.I02533.6 96 DP 97 75 PP
2	B3	49.5	7.7e-16	238	315	22	98
H.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS B3 22 faeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 f++++ ++ + es+ l+l+ ++g++W+v l+ k++++ + +GWkeFv++n+L+ gD+++F+l ++ + ++++++r Pahal.I02533.6 238 FCRKYanQYLPSESQILRLQ-QHGKVWQVLLR-ATKRNSIRFCRGWKEFVSDNRLQIGDICLFELLKNeKMLAMNIHIIR 315 55555554445566667755.6*******5.44445688999******************9988788888888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.12E-21	2	100	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	8.0E-21	3	100	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.011	5	98	IPR003340	B3 DNA binding domain
CDD	cd10017	2.13E-17	6	96	No hit	No description
SMART	SM01019	7.0E-8	8	98	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.6E-12	8	96	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.45E-19	215	314	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	4.2E-22	215	315	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.41E-17	218	312	No hit	No description
SMART	SM01019	5.6E-4	219	315	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.605	221	316	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.1E-14	236	316	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009909	Biological Process	regulation of flower development
GO:0010048	Biological Process	vernalization response
GO:0005654	Cellular Component	nucleoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MDDRCKYFFK VMMGDFRSRM TIPDKFAQRF RDKIRGKIKL KVYNGSTCTV VVARHRNKLV 60 LEAGWEAFIS THDIRLADLL VFRYNGNFQF EVLVFDPSCC VKESSNVAQN CCDHVQVQQR 120 HRDLLDISSD SGDDQEPMQS SGSEDPTPAE KKGPNQSTKK TNTSSLTCHL NAPDVYSSEN 180 DQEISSMTSY IFSPFTHLTQ KQRMKVEKRV QDICSSIPIF GSVMTKCNIT RNPRYLGFCR 240 KYANQYLPSE SQILRLQQHG KVWQVLLRAT KRNSIRFCRG WKEFVSDNRL QIGDICLFEL 300 LKNEKMLAMN IHIIRK*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796319.1	0.0	putative B3 domain-containing protein Os03g0621600 isoform X2
TrEMBL	A0A2S3IK43	0.0	A0A2S3IK43_9POAL; Uncharacterized protein
STRING	Pavir.Ia01271.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	8e-24	B3 family protein

Link Out ? help Back to Top
Phytozome	Pahal.I02533.6