PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02538.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 376aa    MW: 42851.9 Da    PI: 8.6953
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02538.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.31.8e-153033693299
                     --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
              B3  32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                     +++t+ le   g++W+ ++ + +++++ +l +GW +F+++ngL++gD+++F l+++ ++ +++v+++++
  Pahal.I02538.1 303 SGQTVALEC-MGKTWKTQMVIHNGRRW-FLNGGWAKFARDNGLRVGDICLFDLKKNaRKLTMKVHIISR 369
                     455666555.89*******77777766.6999**********************999********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.8E-14102191IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-14102192IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.2109206IPR003340B3 DNA binding domain
CDDcd100173.15E-12109201No hitNo description
PROSITE profilePS508639.77110207IPR003340B3 DNA binding domain
PfamPF023625.7E-8137191IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-21264369IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-18265368IPR015300DNA-binding pseudobarrel domain
CDDcd100171.78E-17270368No hitNo description
SMARTSM010196.6E-5272370IPR003340B3 DNA binding domain
PfamPF023621.5E-13293369IPR003340B3 DNA binding domain
PROSITE profilePS5086312.012313370IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MQGREEKEKV IVREHDESNS NAIDGLMLER ENAEFRFQHD YRANNEVAPE KHWCQSEYIP  60
SANYSLESDD LQAPPKADYV LSYRSILSEA QKERVIAFIQ DIQPKVTVYV AVMQKRNVQP  120
PGPFLGISKE YSFPHFPHRS TNVTLQTASK SNKWHPKFYK RNASRKNMLM GQWLDFVRDN  180
HVQEGDICLL FPAEGRAGFQ IVCPCPSRSS AKMASEVHIM EETTNDESLD SEDSGGSSPP  240
LYIVPCRNYL SKSQKKIVEE RVRAIQSEVP ICVAVMKNNN VGDAQKWMLE LGVRYAAVHL  300
PASGQTVALE CMGKTWKTQM VIHNGRRWFL NGGWAKFARD NGLRVGDICL FDLKKNARKL  360
TMKVHIISRE QFSLK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797620.10.0B3 domain-containing protein Os03g0619800-like isoform X3
SwissprotQ6AV229e-92Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBLA0A2T7C3Q90.0A0A2T7C3Q9_9POAL; Uncharacterized protein
STRINGPavir.Ia01277.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.13e-06B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]