PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02540.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 403aa    MW: 45444.1 Da    PI: 10.2139
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02540.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.21.3e-121222031697
                     EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
              B3  16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                     l +pk +a  h + +++   +tl+   ++++W  ++  rk +++y+l++ W +Fv++n++++ D++++   +  ++f+++v ++
  Pahal.I02540.1 122 LAIPKGYAFGHFLHERT--NVTLQRpGKSKKWHPRFYQRKDKRMYMLRGQWLDFVRDNHVQVEDICILVPAKGgRRFTFTVYLL 203
                     7899***9999888655..6888884667*******76999999************************9775558888888765 PP
2B355.69.4e-18308399699
                     ..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3   6 tpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +++dv+ + +++ l k+fa+ h  ++ +++  +l +   ++W+ k+ +  +s+r +l +GW  Fv++ngL++gD+++F+l+++ e +++v+++++
  Pahal.I02540.1 308 MNADVTYRyCIMELGKRFAAPHL-PH-RGQ-TVLLQCMKKVWKTKMVIHSGSRRWFLVGGWTTFVRDNGLRVGDICLFELKKKGELTMRVHIISR 399
                     467776666999*******9994.33.343.56667799*******9988888999999*********************9999999****9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.5E-1698202IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-1699203IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-14106201No hitNo description
SMARTSM010190.0072106206IPR003340B3 DNA binding domain
PROSITE profilePS508639.784107206IPR003340B3 DNA binding domain
PfamPF023628.2E-11122203IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.1E-22293398IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-21296400IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.52304400IPR003340B3 DNA binding domain
SMARTSM010196.2E-11304400IPR003340B3 DNA binding domain
CDDcd100172.13E-18304398No hitNo description
PfamPF023624.4E-15309399IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MMLKLQSALI SSFHDPTESS ASERLVRCEK GGSSHREKTA KMVATSSSSE SSGEDNLSEN  60
ESFQLDDLQT NPGPNYVLSR GSYLSKAQEE RVMALIQEIQ PESTVYVAVM RKCHILKPGP  120
YLAIPKGYAF GHFLHERTNV TLQRPGKSKK WHPRFYQRKD KRMYMLRGQW LDFVRDNHVQ  180
VEDICILVPA KGGRRFTFTV YLLHATATHS RGGTAFQRVG SFHGRSSTKM ASAVHIKEAS  240
SDDHVSSDSD KDEASHKSLK SNSGGPSEAP YIVSSKSCLS QSQKKIVEEK VRAIQSEVPV  300
FVAIMKKMNA DVTYRYCIME LGKRFAAPHL PHRGQTVLLQ CMKKVWKTKM VIHSGSRRWF  360
LVGGWTTFVR DNGLRVGDIC LFELKKKGEL TMRVHIISRE QF*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792770.10.0B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792772.10.0B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792773.10.0B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792774.10.0B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792775.10.0B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792776.10.0B3 domain-containing protein Os03g0619600-like isoform X2
RefseqXP_025792777.10.0B3 domain-containing protein Os03g0619600-like isoform X2
SwissprotQ6AV221e-125Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBLA0A270R6840.0A0A270R684_9POAL; Uncharacterized protein
STRINGSi035266m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-08B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]