PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02540.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 241aa    MW: 27117.4 Da    PI: 10.3934
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02540.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3573.4e-18145237499
                     E-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   4 vltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     + +++dv+ + +++ l k+fa+ h  ++ +++  +l +   ++W+ k+ +  +s+r +l +GW  Fv++ngL++gD+++F+l+++ e +++v+++
  Pahal.I02540.2 145 K-MNADVTYRyCIMELGKRFAAPHL-PH-RGQ-TVLLQCMKKVWKTKMVIHSGSRRWFLVGGWTTFVRDNGLRVGDICLFELKKKGELTMRVHII 235
                     3.467776666999*******9994.33.343.56667799*******9988888999999*********************99999*9****99 PP

                     -S CS
              B3  98 rk 99 
                     ++
  Pahal.I02540.2 236 SR 237
                     87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.515144IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-4241IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-6241IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-22131236IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-22134238IPR015300DNA-binding pseudobarrel domain
CDDcd100172.48E-18142236No hitNo description
PROSITE profilePS5086312.52142238IPR003340B3 DNA binding domain
SMARTSM010196.2E-11142238IPR003340B3 DNA binding domain
PfamPF023621.6E-15147237IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MYMLRGQWLD FVRDNHVQVE DICILVPAKG GRRFTFTVYL LHATATHSRG GTAFQRVGSF  60
HGRSSTKMAS AVHIKEASSD DHVSSDSDKD EASHKSLKSN SGGPSEAPYI VSSKSCLSQS  120
QKKIVEEKVR AIQSEVPVFV AIMKKMNADV TYRYCIMELG KRFAAPHLPH RGQTVLLQCM  180
KKVWKTKMVI HSGSRRWFLV GGWTTFVRDN GLRVGDICLF ELKKKGELTM RVHIISREQF  240
*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792770.11e-164B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792772.11e-164B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792773.11e-164B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792774.11e-164B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792775.11e-164B3 domain-containing protein Os03g0619600-like isoform X1
RefseqXP_025792776.11e-164B3 domain-containing protein Os03g0619600-like isoform X2
RefseqXP_025792777.11e-164B3 domain-containing protein Os03g0619600-like isoform X2
SwissprotQ6AV212e-75Y3982_ORYSJ; B3 domain-containing protein Os03g0619800
TrEMBLA0A270R6841e-178A0A270R684_9POAL; Uncharacterized protein
STRINGPavir.J19009.1.p1e-134(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-08B3 family protein