PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02567.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 209aa    MW: 21603.7 Da    PI: 8.7602
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02567.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM25.24.7e-0881378127
             NAM   8 hPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk.kvka..eekewyfFskrdkkyatgkrknratksgyWk.at.gkdkevl 93 
                      P+d++l+++ L++ +++ +    + +  +++ +d+y+v P++L +  + a  +   wyf ++++ +y+    k  a  +g W  +t g   +v 
  Pahal.I02567.1   8 APSDHDLITFVLRPMAAAGTgqqgVGVGGFVHMADVYSVAPEKLAErYAPApgTGGIWYFVCPARCRYRA--AKAGALGEGCWTsETgGAIGPVR 100
                     6************998888765555555579999**********84233233244489999999999964..45557899***954514567888 PP

             NAM  94 skkgelvglkktLvfykgra...pkgektdWvmheyr 127
                       +g+ vg  + L +   +a      ++  W+m e +
  Pahal.I02567.1 101 GLDGRRVGQSRALCYGARTAvpwTAVTRHGWCMVELA 137
                     889999*******998543311134457789998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.3441158IPR003441NAC domain
PfamPF023652.3E-78136IPR003441NAC domain
SuperFamilySSF1019411.96E-168158IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MAAAVVRAPS DHDLITFVLR PMAAAGTGQQ GVGVGGFVHM ADVYSVAPEK LAERYAPAPG  60
TGGIWYFVCP ARCRYRAAKA GALGEGCWTS ETGGAIGPVR GLDGRRVGQS RALCYGARTA  120
VPWTAVTRHG WCMVELALDD QDGGGGGEDF VLCKLFRSPR NEASSATAAA AALAAVPALV  180
SSCKRKAAGG NHPEAPPCVR QQLMQRSF*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791596.11e-149uncharacterized protein LOC112872751
TrEMBLA0A2S3IK741e-148A0A2S3IK74_9POAL; Uncharacterized protein
STRINGPavir.J18422.1.p1e-103(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43632158