PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02568.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 227aa    MW: 23825.2 Da    PI: 9.313
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02568.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.0001178100123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ Cgk+F+++  L  H ++H
  Pahal.I02568.1  78 HRCSVCGKPFPSHQALGGHKSSH 100
                     79**************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.04E-878100No hitNo description
PfamPF139122.4E-1078102IPR007087Zinc finger, C2H2
SMARTSM003550.04178100IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.11578105IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SuperFamilySSF576671.04E-8133160No hitNo description
PfamPF139123.3E-13137162IPR007087Zinc finger, C2H2
SMARTSM003550.18138160IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328138160IPR007087Zinc finger, C2H2
PROSITE patternPS000280140160IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MAAMVEAARD APATPWPRPA ECPVSAREGS AEGWARRKRS RRHLRRAAPT EEEHLALCLL  60
MLARGQRDAR APAQQQEHRC SVCGKPFPSH QALGGHKSSH RARPPPAAAP TPPVAAVSSA  120
SPAASSSTSG AGSSSRVHEC SVCRKTFPTG QALGGHKRCH YEGAGGATTI VASTTPGLMS  180
CRGFDLNVPA LPDMLTAGDR CMPAAEEEEE VLSPLAFKKP RLMILA*
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794414.11e-161zinc finger protein 1-like
SwissprotQ424303e-45ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A2S3IKR21e-159A0A2S3IKR2_9POAL; Uncharacterized protein
STRINGPavir.J15423.1.p1e-102(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.13e-35salt tolerance zinc finger