PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02571.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 240aa    MW: 24636.9 Da    PI: 7.4743
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02571.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.99e-302105199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C++ Cvl+p +     ++ q++++ +v+k+FG++ ++  l+a+p ++r+++++sl+yeA+ r+ +Pv+Ga+g++++++++l+q+
  Pahal.I02571.1   2 SCNGCRVLRKGCSDACVLRPSIewidgAQPQANATVFVAKFFGRAGLVASLAAVPLHHRPALFRSLLYEACGRTINPVSGAIGLMWTGNWDLCQA 96 
                     6*********************9999888899*************************************************************** PP

          DUF260  91 kaelallke 99 
                     +a+++l++e
  Pahal.I02571.1  97 AADAVLRGE 105
                     **9998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.7291107IPR004883Lateral organ boundaries, LOB
PfamPF031959.2E-242100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLAAVPLHHR  60
PALFRSLLYE ACGRTINPVS GAIGLMWTGN WDLCQAAADA VLRGESLRAL STIPAAFTDR  120
DMDGLYGNVG AAAASSSSPE NSSSAPSRKR RRNNNGGLAF NAAAVPACCA CQNPPPGLLQ  180
SCELDLCLTP ASPMAGSGRR GCGGGGASDE YSATTTCEDL QATGDVEAAR APALLNLFN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147151RKRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2880021e-160AK288002.1 Oryza sativa Japonica Group cDNA, clone: J075110B01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791505.11e-172LOB domain-containing protein 37-like
TrEMBLA0A2S3IK771e-171A0A2S3IK77_9POAL; Uncharacterized protein
STRINGPavir.J16587.1.p1e-132(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84503041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.15e-56LOB domain-containing protein 37