PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02572.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 398aa    MW: 42366.9 Da    PI: 4.625
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02572.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.3e-1957106255
             AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Pahal.I02572.1  57 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 106
                     789******.7*********33....35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.01E-3056113No hitNo description
SuperFamilySSF541712.81E-1957114IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-2757113IPR001471AP2/ERF domain
PfamPF008479.9E-1457106IPR001471AP2/ERF domain
SMARTSM003808.7E-3557120IPR001471AP2/ERF domain
PROSITE profilePS5103219.59957114IPR001471AP2/ERF domain
PRINTSPR003675.7E-85869IPR001471AP2/ERF domain
PRINTSPR003675.7E-88096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MALKRKASPG LADDLMISCG GGRSHASSNT FAPAPASRES WAEAVGAVAA AQRGRKRFVG  60
VRQRPSGRWV AEIKDTIQKI RVWLGTFDTA EEAARAYDEA ACLLRGSNTR TNFWPRAAGA  120
AAPAAAVFTL QHPPPPSALP SKVTNLLLLR LKKARSSAGA VTLAQQEAPV QHRQAQQGYG  180
GQDEYSFQVD DFLSYDGASD ELQVVKHEVA SNCSQEAEDD GDEEVGGEED EAPLDFGFMD  240
KQPSPAREVD DAGPLYSPFE MVADELGCTA EVEPSGPINE VMKRMKYERK ISASLYALSG  300
VSECLRLRLG DGGDHVGAGR HELALSGLRD ACRKQQEQEV VDEGGNAVGH EESSSCSNSI  360
SSEAASSSPE AASSRQEAKA AESDMLLWSS LDLPPIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-13571131471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277046e-88KJ727704.1 Zea mays clone pUT5643 AP2-EREBP transcription factor (EREB142) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796844.10.0uncharacterized protein LOC112876880
TrEMBLA0A2S3IK890.0A0A2S3IK89_9POAL; Uncharacterized protein
STRINGPavir.Ia01300.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54823052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-22related to AP2 11