PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02592.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 322aa    MW: 35855.8 Da    PI: 9.1203
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02592.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.000371030323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C+ C+ksF++  +L  H+++H
  Pahal.I02592.1 10 CKVCKKSFPSYNSLGGHMNLH 30
                    *******************99 PP
2zf-C2H216.81.9e-05227249123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C+ Cgk+F+++  L +H + H
  Pahal.I02592.1 227 HDCKLCGKVFTSSKGLASHKKFH 249
                     56******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.97E-6635No hitNo description
SMARTSM003551.7830IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.785835IPR007087Zinc finger, C2H2
PfamPF139129.6E-9831IPR007087Zinc finger, C2H2
PROSITE patternPS0002801030IPR007087Zinc finger, C2H2
SuperFamilySSF576671.97E-685105No hitNo description
SMARTSM0035518086105IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.97E-6222249No hitNo description
SMARTSM003550.033227249IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.9E-4227249IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.845227249IPR007087Zinc finger, C2H2
PfamPF139120.0056227249IPR007087Zinc finger, C2H2
PROSITE patternPS000280229249IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MPPRGRKHWC KVCKKSFPSY NSLGGHMNLH RVKRKQKNQA RSTLSLPNIG DGPGGYGLRE  60
RRHSTWLLCD SSDDEYLTMV PKKEFQLCFK VFASCHALSV HMRAHARHER KMVAKEASRE  120
SNGYSDHKVV VSTPVMLTYG IEEVNAARVL LMISGYSGMD SASEHCDEDF EMDGNSAYCV  180
QKSEMELDYS CHGKTGDAEL MMPESPSSDV KLKFSSLSLV LKATESHDCK LCGKVFTSSK  240
GLASHKKFHK VPDHEKVAAS PNSAVSQTGQ QLLEVDSRLL CLNLNLPGFS DRNYRSRSAK  300
SAQTPSWTTR AFRSERMLGV V*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796823.10.0uncharacterized protein LOC112876858
RefseqXP_025796824.10.0uncharacterized protein LOC112876858
TrEMBLA0A2S3IK940.0A0A2S3IK94_9POAL; Uncharacterized protein
STRINGPavir.Ib03920.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143671921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.17e-07C2H2 family protein