PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02732.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 126aa    MW: 13535.3 Da    PI: 4.7364
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02732.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.81e-1173116349
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 
                     + GV + + +gr+ +eIrd + ng  +r++l +f++ae A  a+++a
  Pahal.I02732.1  73 FIGVQRQP-WGRFTVEIRDSTRNG--ARVWLSTFDSAEAATMAYDQA 116
                     569*9888.**********44465..*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.51372125IPR001471AP2/ERF domain
SMARTSM003806.1E-572124IPR001471AP2/ERF domain
PfamPF008471.1E-773119IPR001471AP2/ERF domain
PRINTSPR003671.2E-57384IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-1273120IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-1673119IPR001471AP2/ERF domain
PRINTSPR003671.2E-596112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MEGWLLLEVL VLAQLFGMME DGCWWSTGYC GDEVPTPAVP GTSYGRRRAS AAEVSAVPAA  60
GQVAPGGSSK GAFIGVQRQP WGRFTVEIRD STRNGARVWL STFDSAEAAT MAYDQATLSW  120
MYHLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1567119961Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277021e-52KJ727702.1 Zea mays clone pUT5641 AP2-EREBP transcription factor (EREB128) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803964.11e-24ethylene-responsive transcription factor ERF094-like
TrEMBLA0A3L6T4H83e-32A0A3L6T4H8_PANMI; Uncharacterized protein
STRINGPavir.Ba02374.1.p3e-32(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-18ethylene response factor 1