PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I02852.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

YABBY

Protein Properties

Length: 312aa MW: 32482.8 Da PI: 9.0173

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I02852.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	78.9	1.5e-24	44	92	6	54
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas 54 +seq+Cyv+C fC+t+l+vsvP++slfk+vtvrCGhC+sll+vn++ Pahal.I02852.1 44 ASEQLCYVHCHFCDTVLVVSVPTSSLFKTVTVRCGHCSSLLTVNMRGLL 92 79****************************************9998655 PP
2	YABBY	130.5	2.2e-40	197	263	105	170
YABBY 105 edeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +e +pr+ p v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl Pahal.I02852.1 197 AKEPSPRANPvVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 263 567789998879*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	9.8E-63	44	263	IPR006780	YABBY protein
SuperFamily	SSF47095	7.2E-8	202	256	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.7E-4	212	255	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MSSSSSSSSA ASAAAVFPPS PPPLLVENLP PLHQLTPVAA APPASEQLCY VHCHFCDTVL 60 VVSVPTSSLF KTVTVRCGHC SSLLTVNMRG LLFPGTPTTN ASAAAAPADV TSTTTTITTP 120 PQPPPPASSV NNGQFHFPHS VNLAPNPPHQ SLLDEISSAN PSLQLLEQHG LGGLIPGGRN 180 AAAPPQPQPA AAGNKGAKEP SPRANPVVNR PPEKRQRVPS AYNRFIKDEI QRIKAGNPDI 240 SHREAFSAAA KNWAHFPHIH FGLMPDHQGL KKTSLLPQDH HQRKDALLKD GLYAAAAAAA 300 AAAANMGVAP Y*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU971153	0.0	EU971153.1 Zea mays clone 358521 axial regulator YABBY1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796914.1	0.0	protein YABBY 3-like
Swissprot	Q8L556	1e-103	YAB3_ORYSJ; Protein YABBY 3
TrEMBL	A0A2S3IKW5	0.0	A0A2S3IKW5_9POAL; Uncharacterized protein
STRING	Si036788m	1e-155	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	3e-42	YABBY family protein

Link Out ? help Back to Top
Phytozome	Pahal.I02852.1

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]