PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02922.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 196aa    MW: 20904.9 Da    PI: 8.4803
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02922.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.3e-076312047
                     TTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqky 47
                     G+  W+ Ia+ ++ gRt+  +k++w++ 
   Pahal.I02922.2  6 GSC-WSVIAAQLP-GRTDLAIKNYWNST 31
                     555.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.354136IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-10233IPR009057Homeodomain-like
SuperFamilySSF466894.24E-7237IPR009057Homeodomain-like
PfamPF002491.3E-5631IPR001005SANT/Myb domain
CDDcd001673.65E-5832No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MYSKRGSCWS VIAAQLPGRT DLAIKNYWNS TLRKKFPAAR TSAAAAYHRR NRPACSTSSD  60
AGTPARDLQL VFYSSEESST AGSSPAKPVL AGPTPVQAVQ PPVPVVAAQP IAAAPVSGPV  120
KIEQKQAVVS LPRLGKTPPP PPPPPRACDQ TGERVMDIVC APMSPAPLSF MEPDELACIY  180
QFDDIDSFLP WFDHH*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791626.11e-140myb-related protein Pp2-like
TrEMBLA0A2S3ILL51e-138A0A2S3ILL5_9POAL; Uncharacterized protein
STRINGPavir.J36491.1.p1e-101(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-10myb domain protein 36