PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03137.4
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ARR-B
Protein Properties Length: 294aa    MW: 33425.5 Da    PI: 6.0444
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03137.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.62.5e-27138192156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k rl Wt +LH++F+ av++L G++kA+Pk+ile+mkvk Lt+e+v+SHLQkYRl+
  Pahal.I03137.4 138 KSRLSWTMQLHRQFIAAVNSL-GADKAVPKKILEIMKVKHLTREQVASHLQKYRLH 192
                     68*******************.9*******************************97 PP
2Response_reg39.14.1e-1487541109
                     HHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
    Response_reg  41 ekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                     ++++Dli++D+  p+ d l +l+e +++  ++p i+++++g+ +++ +++  Ga+dfl Kp  +eel +
  Pahal.I03137.4   8 QQTVDLIICDLFFPTEDSLLILQEVTSKF-DIPTIIMSSNGDTSTVMKCITNGASDFLIKPPRIEELKN 75 
                     678**********************9999.9******************************99999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011022.234181IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.2E-10775IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.68E-13781No hitNo description
Gene3DG3DSA:3.40.50.23001.4E-188108No hitNo description
SuperFamilySSF521723.42E-16891IPR011006CheY-like superfamily
PROSITE profilePS5129412.343135194IPR017930Myb domain
SuperFamilySSF466899.85E-19136195IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-27137195IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-25138192IPR006447Myb domain, plants
PfamPF002497.4E-7140190IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MSSIYGNQQT VDLIICDLFF PTEDSLLILQ EVTSKFDIPT IIMSSNGDTS TVMKCITNGA  60
SDFLIKPPRI EELKNIWQHV FRKQIFGAEH RKCSNAQQHV DHQLSYRAMG ITEEATATLD  120
SEIRGNNGTV TDIRDLRKSR LSWTMQLHRQ FIAAVNSLGA DKAVPKKILE IMKVKHLTRE  180
QVASHLQKYR LHLRNSTQAL HKDDRPSSSG YPNNESSILR TQLNSSSNSL YFDQDGCMEI  240
TDYSLPKDDL SSGSECILGE RNNYSPECFQ DFRWDSEKQG SETTTYLWNF EAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-17137194461ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that acts as floral inducer to promote short-day (SD) flowering pathway. Activates Hd3a and other FT-like genes independently from Hd1. May also activate MADS-box transcription factors involved in flowering regulation. {ECO:0000269|PubMed:15078816}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Daily oscillation and diurnal expression in plants grown in short day (SD) but not in long day (LD) conditions. {ECO:0000269|PubMed:15078816}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797974.10.0two-component response regulator EHD1-like isoform X1
SwissprotQ7Y0W31e-112EHD1_ORYSI; Two-component response regulator EHD1
TrEMBLA0A2S3ILP90.0A0A2S3ILP9_9POAL; Uncharacterized protein
TrEMBLA0A2S3IM730.0A0A2S3IM73_9POAL; Uncharacterized protein
STRINGSi039992m1e-172(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-46response regulator 2