PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03350.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 238aa    MW: 25975.5 Da    PI: 5.1049
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03350.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM29.71.8e-09129100128
             NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                     +g+k +L fy+g+ap g++t Wvmhey++
  Pahal.I03350.3   1 MGMKIILQFYEGHAPCGKRTGWVMHEYQV 29 
                     59*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.491157IPR003441NAC domain
SuperFamilySSF1019411.7E-10139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGMKIILQFY EGHAPCGKRT GWVMHEYQVE QNDEANLPQV TADANEEDVC SSKVQFEQKP  60
LSALDDIDVI ATGDYIELND LLTSEASAST SENSSKRSMV SEDYFDSDAF LREILKGSNT  120
TDGLNQDHKF SIAAPTKSAN VVLSPSEQGL VQFHDNNGMV PGTSHQKPVP EGDRGEHSRQ  180
GFQQQGPSMS SYFPSSHVKP SHSNSSSSSQ SSMKSHKEQS TSKFGMIGKK YCCFGSF*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797458.11e-161NAC domain-containing protein 40-like isoform X5
TrEMBLA0A2S3IMW51e-174A0A2S3IMW5_9POAL; Uncharacterized protein
STRINGPavir.Ib03017.1.p1e-137(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-08NAC domain containing protein 100