PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I03377.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

HD-ZIP

Protein Properties

Length: 294aa MW: 32344.2 Da PI: 4.8927

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I03377.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.2	6.6e-19	69	122	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ ++q+++Le+ Fe +++++ e+++++A+ l+L rqV vWFqNrRa++k Pahal.I03377.1 69 KKRRLAADQVRALERSFEVDNKLDPERKARIARDLSLHPRQVAVWFQNRRARWK 122 4557899**********************************************9 PP
2	HD-ZIP_I/II	124.4	5.4e-40	68	160	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+++qv++LE+sFe ++kL+perK+++ar+L l+prqvavWFqnrRAR+ktkq+E++++aL++++dal++e ++L++++++L++e++e Pahal.I03377.1 68 EKKRRLAADQVRALERSFEVDNKLDPERKARIARDLSLHPRQVAVWFQNRRARWKTKQIEREFAALRARHDALRAECDALRRDKDALAAEIRE 160 69**************************************************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.69E-18	62	126	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.471	64	124	IPR001356	Homeobox domain
SMART	SM00389	6.0E-19	67	128	IPR001356	Homeobox domain
Pfam	PF00046	3.5E-16	69	122	IPR001356	Homeobox domain
CDD	cd00086	4.46E-16	69	125	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.3E-19	75	123	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	99	122	IPR017970	Homeobox, conserved site
Pfam	PF02183	3.1E-14	124	165	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MKRPTTRGSS MVSQATTDQQ EDSCRYMERH GVDGDGTAAA ERDDVEAGAY DEEEDDEELA 60 GSRGGLGEKK RRLAADQVRA LERSFEVDNK LDPERKARIA RDLSLHPRQV AVWFQNRRAR 120 WKTKQIEREF AALRARHDAL RAECDALRRD KDALAAEIRE LREKVERQMD VKLESAEEML 180 PVAAGTAAAV ATVYKDGSTD SDSSAVFNEE ASPYSGAAFD HQHQHQPHPS FTGFTSFLAS 240 SSSLNSSFPS SLYHGVSHLD QEADGFLSAT AAHGFFADEQ GSGLGSWYGG EGW*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	124	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT042027	0.0	BT042027.1 Zea mays full-length cDNA clone ZM_BFb0113G23 mRNA, complete cds.
GenBank	KJ727556	0.0	KJ727556.1 Zea mays clone pUT5416 HB transcription factor (HB127) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025792352.1	0.0	homeobox-leucine zipper protein HOX8-like isoform X1
Swissprot	Q338Z7	3e-95	HOX8_ORYSJ; Homeobox-leucine zipper protein HOX8
TrEMBL	A0A2S3IMB3	0.0	A0A2S3IMB3_9POAL; Uncharacterized protein
STRING	Pavir.J35191.1.p	1e-175	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4283	31	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G40060.1	3e-29	homeobox protein 16

Link Out ? help Back to Top
Phytozome	Pahal.I03377.1

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]